PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g01160.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 319aa    MW: 34864.3 Da    PI: 8.9277
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g01160.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.71.6e-32261182103
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+++++e+++++e++sw e+g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         we
  Zjn_sc00039.1.g01160.1.sm.mkhc  26 FLTKTHQMVEERATDEVVSWAEQGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WE 95 
                                     9*****************************************************************99.........** PP

                                     EEESXXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkkse 103
                                     F++++F++g++ l++ i+r+ks+
  Zjn_sc00039.1.g01160.1.sm.mkhc  96 FANENFRRGEQGLMSGIRRRKST 118
                                     ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5322115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3522115IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3122115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-172649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-2826115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-176476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-177789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAGAVAAAGQ PPKGGGRGGG GGPAPFLTKT HQMVEERATD EVVSWAEQGR SFVVWKPVEF  60
ARDLLPLHFK HCNFSSFVRQ LNTYGFRKVV PDRWEFANEN FRRGEQGLMS GIRRRKSTTP  120
QSAKSGGCAV NVAFSPPLPP LPPTTSGGND RSSSSTSSPP RADLTSENEQ LKKDNHTLAA  180
ELAQARRHCE GLLGFLSRFL DVRQLDLGLL MQEDMRAAGD RQQCRAVADQ DCSDEEKSVK  240
LFGVLLKDAA TKRARCQEAA ASERPIKMIR VCEPGFGVPS SGPGRYGGRD IARKTARLYA  300
CAYEYVHVQV MEDDHNSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B3e-20261195109Heat shock factor protein 2
5d8l_B3e-20261195109Heat shock factor protein 2
5d8l_D3e-20261195109Heat shock factor protein 2
5d8l_F3e-20261195109Heat shock factor protein 2
5d8l_H3e-20261195109Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11421GGRGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277541e-165KJ727754.1 Zea mays clone pUT5697 HSF transcription factor (HSF21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802216.11e-141heat stress transcription factor B-1-like isoform X1
SwissprotQ67TP91e-127HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A1E5VP741e-147A0A1E5VP74_9POAL; Heat stress transcription factor B-1
STRINGPavir.Bb02269.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-54heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]