PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g01260.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 850aa    MW: 91457.5 Da    PI: 10.0549
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g01260.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.5e-355076002103
                                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEE CS
                  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweF 81 
                                   Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF
  Zjn_sc00039.1.g01260.1.am.mk 507 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEF 578
                                   9********************6667*****************************************999.........*** PP

                                   EESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  82 khksFkkgkkellekikrkkse 103
                                   +++ F+kg+k+ll++i+r+k++
  Zjn_sc00039.1.g01260.1.am.mk 579 ANEFFRKGDKQLLCEIHRRKTS 600
                                   *******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.5E-36497592IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-58503597IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-30504597IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-18507530IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-30507597IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18546558IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340547571IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18559571IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MQPPCGAVDH PPSPVTGNSP CRSSPGPWAV YSEGGGRQQR PQAQHSKRTR RGAFEEGRGP  60
CTRSDRQMQS HYSSSVLAKP ASDAMHLRVS CRPDGRDASG RVPTKERRRR FRWWDSAGQP  120
VVIVLSLPIT GAAGQREVPD VAMLIIPSQA LLMHTVSPLS VRCCMQRHRP GCKRAGRGRR  180
YYQYVVNRRH SPPDRFRNPA AKGTPLQRCR IPHEGGPGGR SQAITPGPAA SALTVTATPD  240
RPATIRDRSC KFVIGTTGRR ASAAAQCPVI SGQRASEEGT ARHVEAESDD ARCPGAESGI  300
DGPAAAAPRA VDRAPGPSSP QFRTGQAGAC WPKPYPLQSR YEYKGQFPGP AAPATARDVH  360
RSGHMERCSD PRSAATQYRD SKNHIPILQY STIAACPPGT FAVLHGDTGG ARAGKMSDLI  420
DPCTEADRQS DTYSLPPPPP PARSPGLGHT PHLPSGVTSS DSLRHRPAPV ENGGKDRERM  480
ERVERGGSWE CDAAARSAAQ KAVPAPFLTK TYQLVDDPAT DHIVSWGDDR VSTFVVWRPP  540
EFARDILPNY FKHNNFSSFV RQLNTYGFRK VVPERWEFAN EFFRKGDKQL LCEIHRRKTS  600
SASTASPSPP PFFAPPHFPL FHPGVQHHHH QFVGDDGVVA AHGVGVGFPH PHWREQHAAT  660
RLLALGAPAT SPSSATDGGN CRAATAAVLM EENERLRRSN TALLQELAHM RKLYNDIIYF  720
VQNHVRPVAP SPAATAFLQG LGLQARNKPV GTALNNSGGS TTSSSSLTIA EEPSPPPQQL  780
LDKESGSSAP TKLFGVQLTA PGGAGTKRPP SPDEDQPPSS PATKPRLVLE SADLSLSTAP  840
SAASSPASTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-2149860012123Heat shock factor protein 1
5hdg_A3e-215035997112Heat shock factor protein 1
5hdn_A3e-215035997112Heat shock factor protein 1
5hdn_B3e-215035997112Heat shock factor protein 1
5hdn_C3e-215035997112Heat shock factor protein 1
5hdn_D3e-215035997112Heat shock factor protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110ERRRRF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-58heat shock transcription factor B4