PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g01700.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 446aa    MW: 47928.9 Da    PI: 8.225
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g01700.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-17270324256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ +++keq   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Zjn_sc00039.1.g01700.1.am.mk 270 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 324
                                   788899***********************************************98 PP
2HD-ZIP_I/II125.91.8e-40270360192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rlskeq+++LEesF+e+ +L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+
  Zjn_sc00039.1.g01700.1.am.mk 270 RKKLRLSKEQSAFLEESFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQ 350
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   ke +eLr +lk
  Zjn_sc00039.1.g01700.1.am.mk 351 KELAELR-ALK 360
                                   ******9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-17256320IPR009057Homeodomain-like
SuperFamilySSF466892.35E-18257327IPR009057Homeodomain-like
PROSITE profilePS5007117.086266326IPR001356Homeobox domain
SMARTSM003897.4E-16268330IPR001356Homeobox domain
PfamPF000465.5E-15270324IPR001356Homeobox domain
CDDcd000867.23E-17270327No hitNo description
PROSITE patternPS000270301324IPR017970Homeobox, conserved site
PfamPF021831.8E-10326360IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.5E-24326369IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MINLIIVALP CYSHPVPAFS HEHPKRTCEL RCAALLFLPV TCSATTGQTH HNHRHTHTYA  60
PGGETESRPP CHAGAIKPRG PCEFRRLHYR FLGPSRMELG LSLGDTMADA GRDLVLGLGM  120
GMGVVGREDE GGERRSKRDR EEAASPARME PELGAGRCRR SSPEPPARLT LLSMVPSLGL  180
PWPSPDTGHL EASTRGFDVN RAPSCAAGAA GEEDEEQDDA GAGGAAVSSS PNNSAGSFPT  240
DFSARGQTVP GGGDRACSRA SDEDDGGSSR KKLRLSKEQS AFLEESFKEH ATLNPKQKLA  300
LAKQLNLRPR QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLQ KELAELRALK  360
TVNPFYMHLP ATTLSMCPSC ERVASTNSAA ASGASAPQQA TTPARPPSSG GIGDSAPEPR  420
PSSFAALFSS PLKHPRVAQP QAPASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268274SRKKLRL
2318326RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364470.0BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269110.0KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802237.11e-134homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE21e-132HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A1E5V7401e-142A0A1E5V740_9POAL; Homeobox-leucine zipper protein HOX11
STRINGPavir.J20342.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-62homeobox from Arabidopsis thaliana