PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g02450.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 138aa    MW: 14989.5 Da    PI: 5.2619
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g02450.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-054062123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C+k F ++  L  H++ H
  Zjn_sc00039.1.g02450.1.am.mk 40 FSCTYCDKKFYSSQALGGHQNAH 62
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.69E-72876No hitNo description
PROSITE profilePS5015711.3854067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDLNGGRGFG SEADFDLDLD LNLSLQQPSL APEPEPPGYF SCTYCDKKFY SSQALGGHQN  60
AHKFERSVAK RARELAAARR HAAGQGGERG TASEDEARRG KELGIGLPDS QVSSSQQIRP  120
SPESRRDLAD DIDLSLKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687003e-50EU968700.1 Zea mays clone 323547 zinc finger protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956891.13e-45zinc finger protein 2
TrEMBLA0A2T7ESI42e-45A0A2T7ESI4_9POAL; Uncharacterized protein
STRINGPavir.Bb02239.1.p8e-48(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-13zinc finger protein 2