PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g02900.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 180aa    MW: 20124.9 Da    PI: 10.9017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g02900.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.0003899116320
                                   ETTTTEEESSHHHHHHHH CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                                   C+ C+ +F++ s+L+ H 
  Zjn_sc00039.1.g02900.1.sm.mk  99 CQVCDARFNSASSLQEHR 116
                                   9****************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004510.531550IPR003604Zinc finger, U1-type
SMARTSM003551401843IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.81E-1087131No hitNo description
SMARTSM004510.2294128IPR003604Zinc finger, U1-type
PfamPF128745.6E-797121No hitNo description
SMARTSM003556.497121IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.72397126IPR007087Zinc finger, C2H2
PROSITE patternPS00028099121IPR007087Zinc finger, C2H2
SuperFamilySSF576675.2E-8146177No hitNo description
SMARTSM004510.45147178IPR003604Zinc finger, U1-type
PfamPF128742.2E-7150174No hitNo description
SMARTSM0035512150174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTTLTPPIIA KKQKPPRWTC DLCQVVTPLN KRKVVEHKAG KRHQSKLKAR NKPARATPGS  60
PPLRRNNVES VAENGGGGNA SRPADGEDRE PPQSARWWCQ VCDARFNSAS SLQEHRGGKL  120
HRGNTEAILA KFRSSYSRKN CDGSGKNVRY YCKTCDVHCT GDTTLASHLV GRRHRRKRCE
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1490522