PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g04510.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 478aa    MW: 52546.4 Da    PI: 6.6476
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g04510.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13e-18269324256
                                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   ++++++t+eq+++Le  Fe+ ++++  e+++eLA++lg+  rqV vWFqNrRa+++
  Zjn_sc00039.1.g04510.1.am.mk 269 KTKRRLTAEQVQALEVSFEEeKQKLEPERKRELARRLGIAPRQVAVWFQNRRARWR 324
                                   67889**************98**********************************9 PP
2HD-ZIP_I/II114.85.2e-37270361292
                   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                    krrl++eqv++LE sFeee+ kLeperK elar+Lg+ prqvavWFqnrRAR++tkqlE+d+ +L+ a+d+l + +++L 
  Zjn_sc00039.1.g04510.1.am.mk 270 TKRRLTAEQVQALEVSFEEEKqKLEPERKRELARRLGIAPRQVAVWFQNRRARWRTKQLEQDFYSLRVAHDELLAGRDALV 350
                                   69****************9988*********************************************************** PP

                   HD-ZIP_I/II  82 keveeLreelk 92 
                                   +++++Lr+++ 
  Zjn_sc00039.1.g04510.1.am.mk 351 ADNDRLRSQVI 361
                                   *******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-16264328IPR009057Homeodomain-like
PROSITE profilePS5007117.508265326IPR001356Homeobox domain
SMARTSM003891.4E-16267330IPR001356Homeobox domain
CDDcd000863.78E-15269327No hitNo description
PfamPF000461.5E-15269324IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-18272331IPR009057Homeodomain-like
PRINTSPR000311.2E-5297306IPR000047Helix-turn-helix motif
PROSITE patternPS000270301324IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5306322IPR000047Helix-turn-helix motif
PfamPF021832.5E-11326368IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MICRRQANSC VTLTRRIKHE HHRDPITTNF HFILLLARPS TRGLSFRVTQ QSLSTTNLKA  60
EPVADRAALM RFIGAEAIVL QSAWDKWLDE DMAFVPFDAL LSRAGRIKDE SSRQLVIVSG  120
RRVAQACTDE TPIHPRRRCY GVVAVHHEVI NDPHAVEHQL LPPQIPRRRV ILPIKLAPAG  180
WTATSVFQEE VEERNSAASF CATGGGGSGG QVLLFGGGGG FCGVGAAPMA ASAGAENGRR  240
KRPCLTAHEE LRLDQLCGLE YELQGVPEKT KRRLTAEQVQ ALEVSFEEEK QKLEPERKRE  300
LARRLGIAPR QVAVWFQNRR ARWRTKQLEQ DFYSLRVAHD ELLAGRDALV ADNDRLRSQV  360
INLTEKLQAK EQTAPSAATG TTAMEAAVLL VQLDDDQLRQ TISGEVWPAQ GFPGGANSAS  420
PESYFAGAPS PPSSSEGDCG DEGSAPLLPD AMLLAVAAQL EHGGGYDAGE DSWEWFWN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3568501e-80AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462311.15e-73homeobox-leucine zipper protein HOX25
SwissprotA3BYC11e-63HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A1E5WAR02e-74A0A1E5WAR0_9POAL; Homeobox-leucine zipper protein HOX25
STRINGPavir.J04192.1.p8e-90(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-40homeobox 1