PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g05460.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 266aa    MW: 28899.4 Da    PI: 7.8593
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g05460.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.29.5e-25116175258
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   dDg++WrKYGqK++ gs +prsYYrC ++   gC++kk  +r+++dp++++++Y g+H++
  Zjn_sc00039.1.g05460.1.sm.mk 116 DDGHSWRKYGQKPILGSIHPRSYYRCRHRysqGCTAKKMAQRADDDPTLFDVIYYGTHTC 175
                                   7**************************998899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-26103175IPR003657WRKY domain
PROSITE profilePS5081122.32110173IPR003657WRKY domain
SuperFamilySSF1182903.66E-24112175IPR003657WRKY domain
SMARTSM007746.7E-34115177IPR003657WRKY domain
PfamPF031062.8E-24116175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MERIVHGNEG GTRLVVTELS HIKDLVRQLE THLDGPHGRC KHLTSQIFSL AERSIGLITA  60
AGLDATRKRS GLASATPSAL GDFADVPLKS TKRRETMRKH QVRVKAAEGR EAPVDDDGHS  120
WRKYGQKPIL GSIHPRSYYR CRHRYSQGCT AKKMAQRADD DPTLFDVIYY GTHTCVDTTA  180
ATAGQVTAPA PEHNLDSHNL PQSPCGGLTV KTEGLAAATK PQNGNDNTTP FCSTSASPVS  240
WCLSPATTSD VADEFFDIDV IANFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20116175968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18793LKSTKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956613.12e-76probable WRKY transcription factor 70
RefseqXP_025800891.12e-76probable WRKY transcription factor 30
TrEMBLA0A1E5WLZ77e-79A0A1E5WLZ7_9POAL; Putative WRKY transcription factor 53
STRINGSi030528m7e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-29WRKY DNA-binding protein 46