PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g00580.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CPP
Protein Properties Length: 535aa    MW: 57464.6 Da    PI: 8.9808
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g00580.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR40.84.4e-13206244241
                             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                                     +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ +
  Zjn_sc00040.1.g00580.1.am.mkhc 206 KKKCCNCRNSRCLKLYCECFASGSYCDG-CNCTNCFNNLD 244
                                     799*************************.********976 PP
2TCR50.54e-16289328140
                             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                     k++kgC+Ckks+ClkkYCeCf+a+  Cse+CkC dCkN e
  Zjn_sc00040.1.g00580.1.am.mkhc 289 KHNKGCHCKKSSCLKKYCECFQANILCSENCKCIDCKNFE 328
                                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-14205245IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.873206329IPR005172CRC domain
PfamPF036383.8E-9207242IPR005172CRC domain
SMARTSM011141.4E-19289330IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12292327IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
AIPLRRQRAQ AFAATPPPAL GCRASAPSDL APAPAISLPV PAAPENSAGW MAGKDPSGGR  60
PPQLPPMPAV STQPPIKKLL RQLDFNSAAM AGNPAMAAAA AAAVSRALQP RAVHVGFPLQ  120
QHPRPAAPLG VSQQLQHRGL PVLRPHHVAG HLPLPRMAVT VPVPQLRPIP VQPVLRPPVA  180
VSLKPESPKP RAKLYEGKDG TGTPTKKKCC NCRNSRCLKL YCECFASGSY CDGCNCTNCF  240
NNLDNDVARR EAIDATLERN PDAFRPKIGS SPLANRSNEA SGDLPLIGKH NKGCHCKKSS  300
CLKKYCECFQ ANILCSENCK CIDCKNFEGS EERKALFQGD HKNAIHMQQA ANAAVNGAIG  360
VAGFPSPSAS RKRKHIDPSL DRSNRQHVAN KNCQLPQNAI PDGSVPIDQS VHPPTLGPFK  420
VTYRPLLADI VQADDIKELC KLLVVVSGEA AKAYTGRKTQ EEKEAKEEDN KAGPGTSTNH  480
DREENNQDTD KKTLINDTSS GGIHTDKTLQ EEYRPNCVDD QKSSRPMSPG TLALM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2921033814132Protein lin-54 homolog
5fd3_B1e-2921033814132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBLA0A3L6SJ420.0A0A3L6SJ42_PANMI; Protein tesmin/TSO1-like CXC 5 isoform X1
STRINGPavir.Eb03237.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.17e-86Tesmin/TSO1-like CXC domain-containing protein