PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00040.1.g03480.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WOX

Protein Properties

Length: 274aa MW: 30878.3 Da PI: 6.1825

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00040.1.g03480.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.3	4e-21	91	151	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e+++ l +++e++V++WFqNrRa+ k+ Zjn_sc00040.1.g03480.1.sm.mkhc 91 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITADLshhgQISETNVYNWFQNRRARSKR 151 89***************99************************************97 PP
2	Wus_type_Homeobox	100.4	1.3e-32	90	153	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW Ptp Q++iLe+++++G tP+k++i++ita L+++G+i+++NV++WFQNr+aR+++kq Zjn_sc00040.1.g03480.1.sm.mkhc 90 TRQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITADLSHHGQISETNVYNWFQNRRARSKRKQ 153 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-17	86	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.803	87	152	IPR001356	Homeobox domain
SMART	SM00389	5.6E-14	89	156	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.89E-18	90	155	IPR009057	Homeodomain-like
Pfam	PF00046	6.4E-19	91	151	IPR001356	Homeobox domain
CDD	cd00086	3.79E-13	91	153	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEWGDRATAA AAATEEAEER GGEPLGYVKV MTDEQMEVLR KQISIYATIC GQLVEMHRAL 60 AEHQDSIAGM GFSNLYCDPL IVPGGHKITT RQRWQPTPMQ LQILENIFDQ GNGTPSKQKI 120 KEITADLSHH GQISETNVYN WFQNRRARSK RKQAAALPNN VESEAEADEE SLTDKKPNSD 180 MQLQQSKALN VHNADRFSEM HHIQRDQMSA MMYGSNDNNL RSSGSSGQMS FYENIMSNPR 240 IDQFSGKVEN SRSFSHLQHG EGFDIGWSRE KKGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	152	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815130.1	1e-154	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-120	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2S3HQI6	1e-152	A0A2S3HQI6_9POAL; Uncharacterized protein
STRING	Sb03g038080.1	1e-153	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-54	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]