PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g03610.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 294aa    MW: 31922.4 Da    PI: 6.345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g03610.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.25.1e-21110171259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEE.E-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkve.rsaedpkvveitYegeHnhe 59 
                                     +Dgy WrKYGqK ++++ fpr Y+rC+++   gCp+ k+v+ rs+ dp   +++Y +eH+++
  Zjn_sc00040.1.g03610.1.am.mkhc 110 SDGYLWRKYGQKRITNTSFPRCYFRCSYHrkrGCPASKQVQqRSHGDPPQYDVVYVNEHTCD 171
                                     7***************************99999*******737889**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-2395172IPR003657WRKY domain
SuperFamilySSF1182903.14E-21104172IPR003657WRKY domain
SMARTSM007742.5E-30109172IPR003657WRKY domain
PROSITE profilePS5081117.27110173IPR003657WRKY domain
PfamPF031069.7E-23111171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MQTHSRFSVG SSPPADEHEA VIRELTRGHE LTAQLQAEAL RALRGQGQAE DTAKFILQEV  60
SRAFAICLAI MSSPSAHAPP PTEPGAPATR RPSRDENVPR REIVTCAPHS DGYLWRKYGQ  120
KRITNTSFPR CYFRCSYHRK RGCPASKQVQ QRSHGDPPQY DVVYVNEHTC DTAAWEPEVA  180
ASPAAAGATS PLRDLPGLLA RQRRGVQEEQ ERQALVSSLA IVLGAHSPAG SSTGVAFGQE  240
QQQQQHGASA DPSSRGGQLP QLDVDAELDV MDYDVTGAVY IGDSYGLPDE GLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-131111701068OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458684.15e-96probable WRKY transcription factor 64
TrEMBLC5XNA21e-94C5XNA2_SORBI; Uncharacterized protein
STRINGSb03g038200.12e-95(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125382837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-17WRKY DNA-binding protein 54