PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00040.1.g03820.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 261aa MW: 28444.1 Da PI: 8.7283

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00040.1.g03820.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.2	4.2e-41	118	217	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+ slvyeA+ r+rdPvyG++g i+ Zjn_sc00040.1.g03820.1.am.mk 118 PCAACKLLRRRCAQECPFAPYFSPHEPQKFAAVHKVFGASNVSKMLLEVPEAERGDAVGSLVYEANLRLRDPVYGCMGAIS 198 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqql+ l+ael+++++e Zjn_sc00040.1.g03820.1.am.mk 199 DLQQQLNALEAELEAARQE 217 ************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.161	117	218	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-41	118	215	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MQPIRCPRPV RLTWRGRGGW WRYERGCGWR AEPAGDGEGD EHRQRRKGGD GAAGDRGRCS 60 SGRRAQSDSV IERLDKIRKK IKGEPEASGI TPSASTVAAE TPVPRRLGLG GALNTVTPCA 120 ACKLLRRRCA QECPFAPYFS PHEPQKFAAV HKVFGASNVS KMLLEVPEAE RGDAVGSLVY 180 EANLRLRDPV YGCMGAISDL QQQLNALEAE LEAARQEVTK PAEAPGMSTS AVVYVAEAVE 240 QYPSSDRYKS LNTSEHAAYF G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-41	118	236	11	131	LOB family transfactor Ramosa2.1
5ly0_B	3e-41	118	236	11	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121919	1e-111	AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970407.1	1e-80	LOB domain-containing protein 15
Swissprot	Q9AT61	7e-60	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A1E5VHX5	7e-84	A0A1E5VHX5_9POAL; LOB domain-containing protein 15
STRING	OMERI01G32170.1	7e-80	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	9e-56	LOB domain-containing protein 15

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]