PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g04660.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 223aa    MW: 23912.2 Da    PI: 8.5947
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g04660.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011131153123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++Cp Cg  F     L  H+r+H
  Zjn_sc00040.1.g04660.1.sm.mk 131 HECPVCGLEFAVGQALGGHMRRH 153
                                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.13E-76791No hitNo description
PfamPF139121.4E-116893IPR007087Zinc finger, C2H2
SMARTSM003550.716991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.516996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SuperFamilySSF576672.13E-7126153No hitNo description
PfamPF139122.5E-10130155IPR007087Zinc finger, C2H2
SMARTSM003550.13131153IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93131158IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSKRDRPAAW DEAETPPGAA ETARVLMLLA QAQRRELVPL RHHGHGHGAP FSAGQLQASS  60
RDANDGKVFE CKTCSRQFAT FQALGGHRAS HKRPRPLHRQ PADHDHAELC LGRPTLAPSP  120
PQQQQAKPRV HECPVCGLEF AVGQALGGHM RRHRAEADGS EAPAKLLLPV PAATEKACDV  180
AGGICLDLNL TPSENCAKCR NVLARDVAGK GVHKTLAVLD CSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195KRPRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032313e-33AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11.
GenBankAP0149573e-33AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY2662893e-33AY266289.1 Oryza sativa (japonica cultivar-group) zinc finger transcription factor ZFP19 (ZFP19) mRNA, complete cds.
GenBankCP0126093e-33CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankDQ2442413e-33DQ244241.1 Zea mays clone 3770 mRNA sequence.
GenBankEU9702193e-33EU970219.1 Zea mays clone 342364 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818717.12e-76zinc finger protein ZAT12-like
TrEMBLA0A2T7DEP39e-76A0A2T7DEP3_9POAL; Uncharacterized protein
STRINGPavir.Ea03334.1.p2e-73(Panicum virgatum)
STRINGPavir.J34723.1.p3e-73(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-24C2H2 family protein