PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00040.1.g04830.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 317aa    MW: 33250.1 Da    PI: 8.4266
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00040.1.g04830.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.69e-183998256
                                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                      Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                                   +R+++t eq+ +Le+l+e   ++p+a+++++++ +l     ++ ++V++WFqN++a+++
  Zjn_sc00040.1.g04830.1.am.mk 39 NTRWNPTMEQVAVLERLYEHgVSTPTADQIQHITGRLrehgPIEAKNVFYWFQNHKARDR 98
                                  58*****************99******************999****************98 PP
2Wus_type_Homeobox105.14.4e-3438101265
             Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                   ++tRW+Pt eQ+ +Le+ly++G+ tP++++iq+it +L+e+G ie kNVfyWFQN+kaR+r kq
  Zjn_sc00040.1.g04830.1.am.mk  38 QNTRWNPTMEQVAVLERLYEHGVSTPTADQIQHITGRLREHGPIEAKNVFYWFQNHKARDRSKQ 101
                                   689**********************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.41435100IPR001356Homeobox domain
SMARTSM003891.3E-737104IPR001356Homeobox domain
SuperFamilySSF466892.67E-1037106IPR009057Homeodomain-like
PfamPF000462.7E-153998IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-74098IPR009057Homeodomain-like
CDDcd000863.39E-640101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEAPQGGAQG EASQATGQEA NAVSPPLSPA SAAAAAQQNT RWNPTMEQVA VLERLYEHGV  60
STPTADQIQH ITGRLREHGP IEAKNVFYWF QNHKARDRSK QRQEGFAYFT RMLRRAPSLP  120
VMARPPGPLG RMPASPPELT MAPPSAAAAC SNGSAAGTHV MYAAPYYMPA PAPQASAGNA  180
GYYNLPQAHF GAAVYPRMDI TQDKHMIPTG MTQAQAAAPY NNPQRVVHPA TSGGASAGHR  240
AGRGRETLEL FPLRPTFVLP DNNAPGAAAS LTPSTPSAAS PSFSGGESVS AAGSPDSSAE  300
APPPPFYDFL GLQSADR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814413.12e-67WUSCHEL-related homeobox 5-like
TrEMBLA0A2T7DEM51e-72A0A2T7DEM5_9POAL; Uncharacterized protein
STRINGSi004427m2e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-32WUSCHEL related homeobox 2