PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00041.1.g01160.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 576aa    MW: 63784.4 Da    PI: 9.2763
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00041.1.g01160.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.46.7e-12509552750
                                     HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                          SRF-TF   7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                                     ++ qv fsk r g++KK +E+  L daeva+++f   gkly y 
  Zjn_sc00041.1.g01160.1.sm.mkhc 509 RRSQVHFSKHRVGLFKKTFEVTLLYDAEVALVVFYACGKLYKYF 552
                                     6889*************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF827081.12E-2259186IPR001374R3H domain
SMARTSM003937.8E-465149IPR001374R3H domain
CDDcd026426.35E-1580149No hitNo description
PROSITE profilePS5106111.2781150IPR001374R3H domain
PfamPF014245.1E-983131IPR001374R3H domain
Gene3DG3DSA:3.30.1370.504.8E-1084131IPR001374R3H domain
PROSITE profilePS5167311.599154226IPR024771SUZ domain
PfamPF127522.0E-12177226IPR024771SUZ domain
SMARTSM004321.6E-4470554IPR002100Transcription factor, MADS-box
PfamPF003195.8E-11509551IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.6510555IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-11510555IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-8517532IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-8532553IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MEAADADAAP APDSWETADI DGSMSRLILS PRRASSSPDL ADDQDQPPAQ QQAPSALAPR  60
EDSVAQVDQF LREALEKPRE RLSVLRMEQD ILKFIHDPRQ TQFEFTGLPT SYLRRAAHRL  120
AQHYFLQSIA IPDNSLPDGT GSRIILHKTS SECQLPAVRL ADIPVNLLQE EINSVAKVAI  180
KQRPQKNLHS MNISSAHSSR DSLQKSVEER KEEYNKARAR IFNNSSSNSS ADGRPVDEVA  240
LPNTLHRSTS LELNSSNRLG QGSEVTLERS LTTASASSRS NRNRTEKEPT VSRNRQNNRV  300
AIFRDRESER KDPDYDRSYD RYMQRFDPGF GFNRGPYTIQ PLYAPAVTYN TEFPQLGSAH  360
RSPVAVEQRQ RSIAQHIPGT WSAAQAPNAI GYGPPDGGMA TYNPGQAGAP VRSPVFMHAS  420
QQYAMPTRPG VPFVHPQEPM RPFTQIKMPA GHFFLAYSLE GLCSQRTTFD GDEKIGMADN  480
SFPAGVGSRP ALRPRRCPAS VPPLALAARR SQVHFSKHRV GLFKKTFEVT LLYDAEVALV  540
VFYACGKLYK YFSTSGSASA QNVELTLLGL FTSTAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310223.10.0R3H domain-containing protein 1-like
TrEMBLA0A1B6QB570.0A0A1B6QB57_SORBI; Uncharacterized protein
STRINGSb02g011970.20.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP756333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.13e-10AGAMOUS-like 19