PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00042.1.g00260.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 174aa    MW: 18727.2 Da    PI: 8.2352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00042.1.g00260.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.4e-064567123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C++C++ F++   L  H+++H
  Zjn_sc00042.1.g00260.1.sm.mk 45 YTCGYCKREFRSAQALGGHMNVH 67
                                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576131No hitNo description
SuperFamilySSF576673.26E-64472No hitNo description
PfamPF139121.1E-64568IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.0944572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MERDHGRGLK HQHQQQQVAW TPGHNFGLSG CFSWPAVPQP LSSSYTCGYC KREFRSAQAL  60
GGHMNVHRRD RARLRQCCPG YAPSPNLIAA HHRRAAAAGP PLPNLNFVPP HCAGATTAEP  120
VVYSFFSTTT TSAMKAAVQV NLELGISGGF CGHDGAVPEE GGLDLELRLG CPLE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9591932e-36EU959193.1 Zea mays clone 211832 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975075.25e-55transcriptional regulator SUPERMAN
TrEMBLA0A1E5W4I18e-62A0A1E5W4I1_9POAL; Uncharacterized protein
STRINGPavir.J31403.1.p1e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.15e-17C2H2 family protein