PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00043.1.g01950.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 204aa MW: 21919.5 Da PI: 7.0831

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00043.1.g01950.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32	2.1e-10	28	54	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C +G+rC+++H++ Zjn_sc00043.1.g01950.1.sm.mkhc 28 PGEADCGYYLRTGGCGFGERCRYNHPR 54 57899********************96 PP
2	zf-CCCH	37	5.7e-12	79	103	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++ +tGtCk+G++Ck++H++ Zjn_sc00043.1.g01950.1.sm.mkhc 79 QPVCEYYVKTGTCKFGSSCKYHHPK 103 789********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.1E-4	27	54	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.263	27	55	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.9E-8	29	54	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.94E-6	31	55	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-4	33	54	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.1E-6	76	103	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	76	104	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-9	79	103	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-7	79	105	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-6	81	104	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MWRLGLDGSA GGGEGQEQEA AARLPERPGE ADCGYYLRTG GCGFGERCRY NHPRDRGGTE 60 FGGGANNRAA SDFPERLGQP VCEYYVKTGT CKFGSSCKYH HPKKDGSLQA VLLNNNGFPI 120 RLASVNPVTS DGAQQTVQAG HYGIGHHGSS TTLDNQTIMN KNMYSQSGQG SLSLERVLGL 180 VLTMPKMDIA DMELLANMIT QSVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001150480.1	5e-62	uncharacterized protein LOC100284111
Swissprot	Q5NAW2	3e-57	C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBL	A0A1D6FBY2	6e-62	A0A1D6FBY2_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBL	C0PDQ7	2e-61	C0PDQ7_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBL	K0DF59	2e-61	K0DF59_MAIZE; C3H28 transcription factor (Fragment)
STRING	GRMZM2G036837_P01	4e-62	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP28362	3	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	8e-41	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Friedrichs G,Fikri M,Guo Y,Temps F Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8. J Phys Chem A, 2008. 112(25): p. 5636-46 [PMID:18512897] Ning H,Gong C,Li Z,Li X Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis. J Phys Chem A, 2015. 119(18): p. 4093-107 [PMID:25868004]