PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g03500.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family DBB
Protein Properties Length: 389aa    MW: 41516.5 Da    PI: 6.2789
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g03500.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.87e-06446541
                        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                     C+ +e  e++  C  ++  lC+ C    H        H++ p
  Zjn_sc00043.1.g03500.1.sm.mkhc  4 LCSACEAAEARVLCCADEAALCARCDHDVHAAnrlagkHRRLP 46
                                    7******99*********************6577888888877 PP
2zf-B_box22.72e-0795135537
                        zf-B_box   5 kCpeHe..ekelqlfCedCqqllCedClleeHkg......H 37 
                                      C  H   e+++ +fC +++ llC +C ++ H        H
  Zjn_sc00043.1.g03500.1.sm.mkhc  95 PCFGHApqEHHAYFFCVEDRALLCWSCDVAVHTAsalvsaH 135
                                     69999944455*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694147IPR000315B-box-type zinc finger
SMARTSM003363.4E-8147IPR000315B-box-type zinc finger
CDDcd000211.53E-4344No hitNo description
SuperFamilySSF578459.62E-586131No hitNo description
PROSITE profilePS501199.08691140IPR000315B-box-type zinc finger
SMARTSM003369.4E-991140IPR000315B-box-type zinc finger
CDDcd000214.53E-6102140No hitNo description
Gene3DG3DSA:4.10.45.104.5E-4107124IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MKVLCSACEA AEARVLCCAD EAALCARCDH DVHAANRLAG KHRRLPLLPA AAATAPSCDI  60
CQVLLPAADR LPVPPEEQHF SLPFFPPTLT DSRVPCFGHA PQEHHAYFFC VEDRALLCWS  120
CDVAVHTASA LVSAHRRFLL TGVQVGLQPD TQATQLHTPT ASAASAAADH LHAPPPPPPP  180
AATKKGSSPD PLYSDDDIDW AAPGPDGGVS GNDLPDWSVV DEQFSAPVQK LAEQVVVKPA  240
SKRSPRGAIA RGMQDWPLED EFFGFFEFNT GGHLGFTENG TSKADSRKLG STDGPSNGWS  300
SSDMAQGFFG QVPEVHHHHQ WSVPELPSPP TASGLHWQGG PRHVTSSTAA DAAAMSVPDI  360
FSPENPFRCF AAANTGQPQP ATPRKRRRV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383387RKRRR
2384388KRRRV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960804e-55FP096080.1 Phyllostachys edulis cDNA clone: bphyst018e07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819038.11e-139B-box zinc finger protein 22-like
TrEMBLA0A0A9LRZ41e-147A0A0A9LRZ4_ARUDO; Uncharacterized protein
STRINGPavir.Eb00238.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-33light-regulated zinc finger protein 1