PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00043.1.g04630.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 208aa    MW: 22787.9 Da    PI: 10.1193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00043.1.g04630.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-145192243
                                  SSS-HH.HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS
               Myb_DNA-binding  2 grWTte.EdellvdavkqlGggtWktIartmgkgRtlkqcksr 43
                                   +WT+e Ede++++ v+++G++ W+tIa+ ++ gR +kqc++r
  Zjn_sc00043.1.g04630.1.sm.mk 51 RNWTPEeEDEIIIQMVNKYGPKKWSTIAQALP-GRLGKQCRER 92
                                  6899862689**********************.********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7714595IPR017930Myb domain
SuperFamilySSF466898.28E-124692IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-164792IPR009057Homeodomain-like
SMARTSM007171.1E-64999IPR001005SANT/Myb domain
PfamPF002493.1E-125192IPR001005SANT/Myb domain
CDDcd001672.56E-135292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MTSVKGKVSN KSGQATGLPP TPCEVGAGHE PWRQRSLNGR TTGPTQRSTK RNWTPEEEDE  60
IIIQMVNKYG PKKWSTIAQA LPGRLGKQCR ERPGDRTFNA LELAGQINMH CTAVMAEARD  120
VLASGNRISD EENKENIDAK KETGASKLQT KIIAEARVLD FNECNTPART ADRKPGINLG  180
RSICNASGPW KFMAMRLCGA ASRLQITP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814765.12e-31transcription factor MYB3R-1-like
TrEMBLA0A0D3HSU87e-32A0A0D3HSU8_9ORYZ; Uncharacterized protein
TrEMBLA0A0D3HSU96e-32A0A0D3HSU9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BQT67e-32A0A0E0BQT6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FAR27e-32A0A0E0FAR2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0J8F67e-32A0A0E0J8F6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RFF87e-32A0A0E0RFF8_ORYRU; Uncharacterized protein
TrEMBLA2ZJB67e-32A2ZJB6_ORYSI; Uncharacterized protein
TrEMBLA3CG687e-32A3CG68_ORYSJ; Uncharacterized protein
STRINGOGLUM12G08360.11e-32(Oryza glumipatula)
STRINGOMERI12G04700.21e-32(Oryza meridionalis)
STRINGORUFI12G07840.11e-32(Oryza rufipogon)
STRINGONIVA12G06900.11e-32(Oryza nivara)
STRINGOBART12G07040.11e-32(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2747622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.21e-15Homeodomain-like protein