PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g01760.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 78aa    MW: 8314.64 Da    PI: 7.4563
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g01760.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.81.8e-144477132
                            GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32
                                    C  Cg +   Tp++Rrgp+g++tLCnaCG+ yrk
  Zjn_sc00044.1.g01760.1.sm.mkhc 44 CLRCGISGnaTPHMRRGPEGPRTLCNACGIAYRK 77
                                    6668877778***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-103977No hitNo description
Gene3DG3DSA:3.30.50.101.7E-114377IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.7E-124477IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MMHMLVVPDG GGGELQPLAV LPAVQELELH RDNAADGLEG HVRCLRCGIS GNATPHMRRG  60
PEGPRTLCNA CGIAYRKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309418.12e-44protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1W0W7B64e-43A0A1W0W7B6_SORBI; Uncharacterized protein
TrEMBLA0A1W0W7F14e-43A0A1W0W7F1_SORBI; Uncharacterized protein
STRINGGRMZM2G114461_P011e-42(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.32e-13GATA-type zinc finger protein with TIFY domain