PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g01860.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 196aa    MW: 22264.1 Da    PI: 10.7743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g01860.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.9e-1990140155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     ++y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Zjn_sc00044.1.g01860.1.am.mkhc  90 TQYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDVEARRIRG 140
                                     58********.**********954...4**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-2890150No hitNo description
Gene3DG3DSA:3.30.730.107.1E-3291149IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2291149IPR016177DNA-binding domain
PfamPF008477.2E-1291140IPR001471AP2/ERF domain
SMARTSM003801.4E-3791154IPR001471AP2/ERF domain
PROSITE profilePS5103224.40891148IPR001471AP2/ERF domain
PRINTSPR003675.9E-1292103IPR001471AP2/ERF domain
PRINTSPR003675.9E-12114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MCGGAVLGDL YSRTVTAGDL WADSGSRESG KSRKGKKNSW EFRADDSDDF EADFDEFQDG  60
DSEEEVDFVY GNQEVLRKSS KFGSRKRKKT QYRGIRRRPW GKWAAEIRDP RKGVRVWLGT  120
FSTAEEAARA YDVEARRIRG IKAKVNFPDT VPASKRRRRP GHVAARAAKK SNSALKQLEH  180
FIMRPVRLVS FLAAMT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-21911481472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18488RKRKK
28498RKRKKTQYRGIRRRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463183.11e-59ethylene-responsive transcription factor ERF073
RefseqXP_021308253.11e-59ethylene-responsive transcription factor ERF073
TrEMBLA0A1E5WNS83e-65A0A1E5WNS8_9POAL; Ethylene-responsive transcription factor 1
STRINGPavir.Ba00410.1.p8e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.18e-32ERF family protein