PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g02550.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 661aa    MW: 72618 Da    PI: 4.7706
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g02550.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.5e-13130173146
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                     +g W++eEd ll ++ k lG++ W+ Ia+ +  gRt++ +k+r+ +
  Zjn_sc00044.1.g02550.1.am.mkhc 130 KGGWSQEEDMLLCEVQKILGNR-WTEIAKVVS-GRTDNAVKNRFST 173
                                     688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.6799120IPR017877Myb-like domain
SuperFamilySSF466895.83E-18118184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-19120178IPR009057Homeodomain-like
PROSITE profilePS5129419.713125179IPR017930Myb domain
SMARTSM007177.9E-14129177IPR001005SANT/Myb domain
PfamPF002491.6E-11130173IPR001005SANT/Myb domain
CDDcd001678.12E-10133174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
PSVRHRRVSS FPVRWPLACT PSGPPVQKFP PLPPKPPNPS PPSRPLALRP GSPVDVGRAE  60
HAGSRPMATG PDLSSSSSAA VPDAVPPAAA AKKDRHIVSW SAEEDAVLRS QIGLHGTDKW  120
YNYLNSECKK GGWSQEEDML LCEVQKILGN RWTEIAKVVS GRTDNAVKNR FSTLCKRRAK  180
DEDTYPENGT PCSNANAKRV LTQIGYLTPD AAQSSQPTKH ISSDLKENVT TNMRLFGQEK  240
STQGARQPLA IISSNKDNVE SQNLASKIMA NEFIGVKRAG NFLNKDDPKV TTLLQQADLL  300
SSLAAKIKTE NASQSMDEAW QQLQHHLIKK DDSEISESSM SGMASLLDEL DDLIVDPYEN  360
EEEDEQKQRE QKGTIDEKDE HCNASSQASK TCDEKMDNRP IHMVKENNIL CANMVSGNME  420
SCPEEPASEN LDEVAEDSML QCMESTPIVT DFDDLIVDPY ESKEEDEQKL REQSEQIHVH  480
DKHSNGPAET STGLTLDVAP VLKMDDGLVG NCREESSLCI SILSGPMESC PGADNPTSEY  540
LCKVAEDSMI QSVESASPVQ TNFQGKECAE IHVLRNLSEA AEDSRFQGNE FTSPNHTVLH  600
AKAAAFVSPK FGEAAKDSKL PTMEFTSPAH TVPTFQPNEV DMPTPKFTAS VSFMFHRKQF  660
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1810817837107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634262e-52AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680418.10.0transcription factor MYB88 isoform X2
TrEMBLA0A1E5ULK90.0A0A1E5ULK9_9POAL; Uncharacterized protein
STRINGPavir.Bb03405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.27e-60MYB family protein