PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g03340.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 694aa    MW: 76847.5 Da    PI: 8.4033
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g03340.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-344105022103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zjn_sc00044.1.g03340.1.am.mk 410 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFA 481
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ F+kg k+ll +i+r+ks+
  Zjn_sc00044.1.g03340.1.am.mk 482 NEFFRKGAKHLLVEIHRRKSS 502
                                   ******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-37400494IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-58406499IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.72E-32407499IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-30410499IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-19410433IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-19448460IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340449473IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.8E-19461473IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MQVQIGQAVG KQTAGETVVK HERRSEAKGR PTPAHVTPCG ATELQKTSTG EDGALLGHAR  60
TCDSLRKKQL QCKREDDTLL YCCTTALSCA PQTMRCCRSH PYEQLLGHPV VCMHGADGLL  120
DCSIATSPVH RLSLPPRPGM MLQSRMPGFR FTDMMMYRVV QRFNQKVLLH KIKTLEYAGR  180
QCSAGQRQAC VDWDDDCSCS RSLWVGRTIC SLNTMRIPAV HAAACDYFYL GVRASLRFFL  240
LCTDRSIRRS QAAAASDSFR FFKCQVLLDR PPPPACSITS NRRSPEETYV RALRRRTFTE  300
TRSLLEASST VVSGRSNLED PAGTTRMCLC VRVRDSETGD RAKEGLPFFL LDLSLSLSLS  360
PLNAAELILP LSPSLILRSH APAERLLRRC GEMVVSMESS AHAKPVPAPF LTKTYQLVDD  420
PCTDHIVSWG EDDTTFVVWR PPEFARDLLP NYFKHNNFSS FVRQLNTYGF RKIVADRWEF  480
ANEFFRKGAK HLLVEIHRRK SSQPPTPLPP HQPFHHHHHH LHHQHLNPFA PPPPPPTHPA  540
VYHFQEEPVA AAHGGGVHGG GNDGNGSGGD FLAALSEDNR QLRRRNSLLL SELAHMKKLY  600
NDIIYFLQNH VTPVTSPSAA AHASQLPAGA GGVASSCKLM ELDLDSSSPP PGPDAVPGDA  660
DGTVKLFGVA LQGKKKRLHR EGGDDDDHDQ GSEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A5e-214064994106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A5e-214064994106HEAT-SHOCK TRANSCRIPTION FACTOR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541481e-167BT054148.1 Zea mays full-length cDNA clone ZM_BFb0133K13 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-61heat shock transcription factor B4