PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g04730.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 987aa    MW: 108863 Da    PI: 7.06
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g04730.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.6e-19368467198
                                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 
                                     f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L+
  Zjn_sc00044.1.g04730.1.sm.mkhc 368 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDARGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQ 445
                                     99**************************555567778***************9989999999***9.************ PP

                                     TT-EEEEEE-SSSEE..EEEEE- CS
                              B3  76 egDfvvFkldgrsefelvvkvfr 98 
                                     +gD+v+F++++  +++lv+++++
  Zjn_sc00044.1.g04730.1.sm.mkhc 446 AGDTVTFSRIE-PGGKLVMGFRK 467
                                     ********887.77777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-31360471IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-21365469IPR015300DNA-binding pseudobarrel domain
CDDcd100176.72E-24366467No hitNo description
PROSITE profilePS5086311.589368469IPR003340B3 DNA binding domain
SMARTSM010191.5E-22368468IPR003340B3 DNA binding domain
PfamPF023625.1E-16368467IPR003340B3 DNA binding domain
PROSITE profilePS5105014.979661711IPR011124Zinc finger, CW-type
PfamPF074962.2E-12666708IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MAGVVAAAAA AKRCMNPACG APAAAAAAAG GADWRKGWPL RSGGFAVLCD KCGLAYEQLV  60
FCDIFHQKES GWRDCSFCGK RLHCGCVASK DSYDLLDGGG VQCATCMKNS AAQSASSQVV  120
PKLFPSHSNL RFFGKSDDLF PGRKFEPSSS FMVDSRNDDF TIINKSNHPF MVRNIEVGQS  180
SSILRQKEIE NGSRQIKWEQ STLSIGDMGR MPFLTRTQSS LESPQCVRRD DSKDPNTEST  240
TNESLPEACL SMSLGIANNG SKMEATSNVE RPVLSPTTAI AEGRELTSTL SSFQHAQRAR  300
HFLARPPRVG ENAAFDPTRD VFSHLRVARP PAEGRGRNQL LPRYWPRITD QELQQISGDS  360
NSTIVPLFEK VLSASDAGRI GRLVLPKACA EAYFPPISQP EGRPLTIQDA RGKEWHFQFR  420
FWPNNNSRMY VLEGVTPCIQ SLQLQAGDTV TFSRIEPGGK LVMGFRKATN NVSLPVSWTF  480
SSISLRLSHN FFNIFSPISL LCLSTTQDSQ ISAIANGSLL SETLFSSANE NLSVVSGYPG  540
FLQSIKGAPD LHPSSLYDHH VNSADGDVSW LKTDKFGSRP DEGSLQFLQK RSRNIGSKSR  600
RFLMDAEDAL ELKLTWEEAQ ELLRPAPNAK PTFVTIEDYE IEEYDEPPVF AKRSIFTIRA  660
TGEQDQWIQC DDCLKWRRLP LNIIIASKWT CTDNSWDPNS CSCSAPEELT PKELQSVLQQ  720
YEEMRRRKSI RYGMKLNVSE TDGSSLDALA TAAVYGEVGN QGTASVATTT KHPRHRPGCT  780
CIVCIQPPSG KGPKHSPSCT CNVCMTVKRR FKTLMMRKKQ RQSEREEAEA SKRIQWASRD  840
EPEGSSLSRS PQTLDTTRDS DVTMFDKATD VNKGHIDLNF HPAIRGDQDQ HGSQPRPMSM  900
MGLLEVATRP LDAYMKQSGL TSLAGEQGGS PSTTTAPPAP VESEERTSNE NREREREREP  960
EAMAVDEASE KQQDKAADDT TAAAPAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C3e-673464701125B3 domain-containing transcription repressor VAL1
5yzz_C3e-673464701125B3 domain-containing transcription repressor VAL1
5z00_C3e-673464701125B3 domain-containing transcription repressor VAL1
5z00_G3e-673464701125B3 domain-containing transcription repressor VAL1
5z00_K3e-673464701125B3 domain-containing transcription repressor VAL1
5z00_M3e-673464701125B3 domain-containing transcription repressor VAL1
6j9a_A3e-673464702126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1723728MRRRKS
2807818KRRFKTLMMRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958699.10.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLK3ZQF40.0K3ZQF4_SETIT; Uncharacterized protein
STRINGSi028834m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-157high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]