PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g00300.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 242aa    MW: 25195.1 Da    PI: 4.5695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g00300.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.3e-184893251
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++
  Zjn_sc00045.1.g00300.1.am.mk 48 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAAL 93
                                  69****998.**********843...6*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-3148106IPR001471AP2/ERF domain
PROSITE profilePS5103223.01148105IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2148106IPR016177DNA-binding domain
PfamPF008472.5E-124894IPR001471AP2/ERF domain
SMARTSM003802.3E-3548111IPR001471AP2/ERF domain
PRINTSPR003673.3E-104960IPR001471AP2/ERF domain
CDDcd000182.98E-2049107No hitNo description
PRINTSPR003673.3E-107187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSSEGEVCSP ASSGGTQTSS PPSSSAAADA RHGGVEKRAR DVGGRHPTYR GVRMRAWGKW  60
VSEIREPRKK SRIWLGTFPT PEMAARAHDA AALVVKGSSA VLNFPEAADA LPRPASAAPR  120
DAAAARAAAM EPPALLLVPA AALQQAAAKE PPPPASGGQA QQEEQADEEL EAIVELPRLD  180
EDAAELVTFC SSSSASSWCV DPVWMDGAGY VDSAAAQDDL LFGLDGGDHC WAQSVGALLW  240
NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1939109576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036822e-93AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149622e-93AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951388.11e-73ethylene-responsive transcription factor ERF038
SwissprotQ9LYD34e-47DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1E5UQ323e-76A0A1E5UQ32_9POAL; Dehydration-responsive element-binding protein 3
STRINGSi018222m6e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-30ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]