PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00045.1.g01640.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 245aa MW: 27189.6 Da PI: 7.6594

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00045.1.g01640.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.7e-10	62	112	2	52
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +++k+ r+ +NR +A +sR+RK+ +++ Le+k+k Leae +L +l+ Zjn_sc00045.1.g01640.1.sm.mkhc 62 PDSKKKLRRVRNRDSAMKSRERKRLYLKDLETKSKYLEAECCRLSYTLQCC 112 689*************************************99998777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-14	59	124	No hit	No description
SMART	SM00338	4.6E-4	61	125	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.496	63	121	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.5E-8	64	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.31E-10	65	123	No hit	No description
CDD	cd14704	3.69E-14	66	117	No hit	No description
PROSITE pattern	PS00036	0	69	83	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDDTNEAAVD ATGVGIDEFL DAILIGDGES NGVPDPTGEG SVGGLSVGED EEVMGVDGDD 60 DPDSKKKLRR VRNRDSAMKS RERKRLYLKD LETKSKYLEA ECCRLSYTLQ CCSAENMALR 120 QCLLKDRLIG APTAMQESAV LMETLPLVSL MWLVCIAHLF LIPGVTNRSL LAPSGPVRDP 180 VKLGRMVTNT VKMIRMTTNC VNMNSDARGA LELFRHGRCY KGRKARMKFP WLPWQQLLPR 240 LSVIL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453468.1	7e-89	bZIP transcription factor 50
Refseq	XP_025803229.1	9e-89	bZIP transcription factor 50-like
Swissprot	Q69XV0	8e-60	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	A0A2T7F313	1e-87	A0A2T7F313_9POAL; Uncharacterized protein
STRING	Pavir.J35667.1.p	5e-92	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	6e-13	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]