PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g02460.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 315aa    MW: 34755.2 Da    PI: 6.3546
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g02460.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.63.8e-072462792154
                                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                     k +yp+++++ +L +++gL+ +q+ +WF N+R +
  Zjn_sc00045.1.g02460.1.sm.mkhc 246 KWPYPTEDDKVRLVQETGLQLKQINNWFINQRKR 279
                                     569*****************************87 PP
2ELK26.81.2e-09200221122
                             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                     ELK++L+++Y+++L+++++E++
  Zjn_sc00045.1.g02460.1.sm.mkhc 200 ELKNELKQGYKEKLVDIREEIL 221
                                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-193579IPR005540KNOX1
PfamPF037901.5E-163875IPR005540KNOX1
SMARTSM012566.2E-2689144IPR005541KNOX2
PfamPF037914.7E-1697143IPR005541KNOX2
PROSITE profilePS5121310.057200220IPR005539ELK domain
SMARTSM011880.0023200221IPR005539ELK domain
PfamPF037891.9E-6200221IPR005539ELK domain
PROSITE profilePS5007111.305220283IPR001356Homeobox domain
SMARTSM003894.0E-10222287IPR001356Homeobox domain
SuperFamilySSF466893.89E-15222286IPR009057Homeodomain-like
CDDcd000864.50E-11223284No hitNo description
Gene3DG3DSA:1.10.10.602.2E-24227284IPR009057Homeodomain-like
PfamPF059201.6E-17240279IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAAFHYPDHG LSMDAAAAAA ASSPNPSGFS PGGGEREKAA IAAHPLYERL LEAHVACLRV  60
ATPVDQLPRI DAQIAARPPP LAAAAGAAAA GGPSGGEELD LFMTHYVLLL CSFKEQLQQH  120
VRVHAMEAVM GCWELEQSLQ SLTGASPGEG TGATMSDDED NQVDSEANMF DGNEGSDGMG  180
FGPLMLTEGE RSLVERVRQE LKNELKQGYK EKLVDIREEI LRKRRAGKLP GDTASVLKAW  240
WQAHSKWPYP TEDDKVRLVQ ETGLQLKQIN NWFINQRKRN WHSNPTSSGE KTKKKRYPKE  300
YHSWLRERLV LDCTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276295RKRNWHSNPTSSGEKTKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001169973.10.0putative knotted-like transcription factor family protein
SwissprotQ0E3C30.0KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6ELG00.0A0A3L6ELG0_MAIZE; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6QFP10.0A0A3L6QFP1_PANMI; Putative knotted-like transcription factor family protein
TrEMBLC0PJP10.0C0PJP1_MAIZE; Knotted related homeobox6
STRINGGRMZM2G370332_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-143KNOTTED1-like homeobox gene 3