PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g03490.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARF
Protein Properties Length: 415aa    MW: 46413.8 Da    PI: 7.04
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g03490.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24126227199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f+k+lt sd++++g +++p++ ae+        +++++  ++l  +d++g++W++++i+r++++r++lt+GW+ Fv+a+
  Zjn_sc00045.1.g03490.1.am.mkhc 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAK 202
                                     99*****************************8544444..49************************************* PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD+v+F   ++++ +l+++++r+
  Zjn_sc00045.1.g03490.1.am.mkhc 203 RLVAGDSVLFI--WNDNNQLLLGIRRA 227
                                     ***********..7777778***9997 PP
2Auxin_resp122.92.4e-40252335183
                      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSk 78 
                                     aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+
  Zjn_sc00045.1.g03490.1.am.mkhc 252 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYLKAVHhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSH 330
                                     79*********************************9789**************************************** PP

                      Auxin_resp  79 WrsLk 83 
                                     Wrs+k
  Zjn_sc00045.1.g03490.1.am.mkhc 331 WRSVK 335
                                     **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-49110255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-43119241IPR015300DNA-binding pseudobarrel domain
CDDcd100179.90E-23125226No hitNo description
SMARTSM010194.9E-25126228IPR003340B3 DNA binding domain
PfamPF023622.8E-23126227IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155126228IPR003340B3 DNA binding domain
PfamPF065072.7E-35252335IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MPFAQMIFAF SAAEEHKCLN SELWHACAGP LVSLPGVGSR VVYFPQGHGE QVAASTNKEM  60
EAQIPNYPSL PPQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDSF LPADLGTTSK  120
QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELFAKD LHGNEWKFRH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNDNNQL LLGIRRANRP QTVMPSSVLS  240
SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYLKAVHHTR ISVGMRFRML  300
FETEESSVRR YMGTITGISD LDPVRWPNSH WRSVKVGWDE STAGEKQPRV SLWDIEPLTT  360
FPMYPSPFAL GLKRPWPTGL PSLYGQLDGP LRSGWQLVFV DQEDDVLLVG DDPWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1671935651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277400.0KJ727740.1 Zea mays clone pUT5681 ARF transcription factor (ARF16) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315058.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A453NF600.0A0A453NF60_AEGTS; Auxin response factor
TrEMBLC5XVH80.0C5XVH8_SORBI; Auxin response factor
TrEMBLD9HNU30.0D9HNU3_MAIZE; Auxin response factor
STRINGSb04g004430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]