PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g03570.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 245aa    MW: 26495.4 Da    PI: 6.3122
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g03570.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.32.1e-181961143
                                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                                  kri ++ +rqv fskR+ g++KKA+ LS LC+a vav+ fs+ 
  Zjn_sc00045.1.g03570.1.sm.mk 19 KRIASEEKRQVCFSKRKDGLFKKASDLSALCGAHVAVVAFSPG 61
                                  79***************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.3E-281170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.5071171IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.11E-251182IPR002100Transcription factor, MADS-box
CDDcd002652.38E-321287No hitNo description
PRINTSPR004049.1E-171333IPR002100Transcription factor, MADS-box
PfamPF003195.6E-232067IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-173348IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-174869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTIERKRKKT MGRQKIEIKR IASEEKRQVC FSKRKDGLFK KASDLSALCG AHVAVVAFSP  60
GAKPFSFGHP SVDALVGRFT DPAAPGAMGP APVHSALLEE FSREEEFLAK ALAAEASRKK  120
ALEAAICQAG VWTGDADVKS ASPNDVLAMR SALERVQAEV AERLQEFMAE EAMMQLTASA  180
GLFVADGGVS SHHRDQVVMD EQKMVAMGGN VDHALPFAAM MLPLPPYDHC FDLNHGPVFE  240
VEGQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A5e-1811105192MEF2 CHIMERA
6bz1_B5e-1811105192MEF2 CHIMERA
6bz1_C5e-1811105192MEF2 CHIMERA
6bz1_D5e-1811105192MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
148RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813008.12e-54MADS-box protein AGL71-like
TrEMBLA0A1E5W0853e-58A0A1E5W085_9POAL; Uncharacterized protein
STRINGSb04g004410.12e-51(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-26AGAMOUS-like 62