PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00045.1.g03820.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Whirly

Protein Properties

Length: 163aa MW: 17653 Da PI: 11.2846

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00045.1.g03820.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	20.6	7.5e-07	96	125	110	139
Whirly 110 svtnslvkgnesfsvPvskaefavlrsllv 139 +v n+l+k+ +++svP++k+efa+lr++l+ Zjn_sc00045.1.g03820.1.am.mkhc 96 AVLNNLQKTTDRVSVPITKGEFAALRTALS 125 5778899********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54447	1.73E-16	96	163	IPR009044	ssDNA-binding transcriptional regulator
Gene3D	G3DSA:2.30.31.10	5.9E-14	96	144	IPR009044	ssDNA-binding transcriptional regulator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
AAVREDTLAH SVRRQPALAL LPSDHRGSDR QGGGTMLRLS RFLPSASSQP PAVVSVVDPQ 60 HSFFIPSAPI SSSVGSALTY RAVAAVAAVF FRGFNAVLNN LQKTTDRVSV PITKGEFAAL 120 RTALSFALPH IMGWDQVLTN HHPAPQGSKP RMERPHPDSE WER

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3012	38	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	8e-13	WHIRLY 2