PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00045.1.g04440.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 771aa MW: 82862.1 Da PI: 5.3174

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00045.1.g04440.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.4	1.1e-26	533	582	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sle+l++yFs+ +kdAA++Lgvc+T++KriCRq+GI+RWP+R+i++ Zjn_sc00045.1.g04440.1.sm.mkhc 533 EKTVSLEELQRYFSGRMKDAARSLGVCPTTMKRICRQHGISRWPFRQIAK 582 799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.2	514	603	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-24	535	582	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.34E-18	661	733	No hit	No description
PROSITE profile	PS51745	17.024	666	759	IPR000270	PB1 domain
SMART	SM00666	2.0E-17	666	759	IPR000270	PB1 domain
CDD	cd06407	7.03E-30	667	734	No hit	No description
Pfam	PF00564	4.1E-13	667	736	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.4E-21	667	733	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MDTVLRSFDH LLDRDGARGS SAGGSDDRSR SGGSAAGKVR DTVDGCAAVK ERIARALRIY 60 KEAAEHDDGE RSAGGGVLVQ VWAPARDGAR RVLATRGQPF VLAPPQCHRL FQYRTVSLTH 120 AFPVGGPGAA APGERGMPGR VFDAGTPEWT PNVQYYGTGE YARISYALIY DIQAALALPI 180 LEPDTGACLA VLELVMTSPR LRFADEVDKL CKALQAVELR GSDICCPVAE VCSDEAAEQA 240 MSEVSGVLTT VCEAHQLPLA QPWVRCKRCN STSMEHASLT TAGAPFHLSG DEGVRGFREA 300 CVEQHLREGR GGLVEGAATA RGPRFCADVT KYSMDEYPLA HHARFSGLAG CLAVCVELRR 360 DAGGEGGREE CVLEFFLPPD CSDGQAQKAA VEAVAATIRE CFGNGDLKAI ALCGSQDLAF 420 EIVADDECVL RPDRAIMADA PDPELQLDNH GRYAPDHTIM ADTPDPELQL DNHGGYVRDS 480 DDEDVHLSAA IRGADVDAPE MKNDEQKEGE DPEPQDGNSR RRRKKVVGKR KNEKTVSLEE 540 LQRYFSGRMK DAARSLGVCP TTMKRICRQH GISRWPFRQI AKANNSLDKV KRIFESVQYS 600 PQPMAAPAAS QQAPALATAH GPPAALPCLS SALGVASSQG SCQEPPPPRK RSITRKPFHA 660 GDTQGLVTVK ASYRGDIVRF RVPSFAGVEA VKGEVAKRLG LEMDAFDVKY LDDDNEWVLL 720 SCDADFQECL EVFPALSTAS SSSGSGAAQP VVRLMVQEVA DNHGSSCASS D

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MDTVLRSFDH LLDRDGARGS SAGGSDDRSR SGGSAAGKVR DTVDGCAAVK ERIARALRIY  60
KEAAEHDDGE RSAGGGVLVQ VWAPARDGAR RVLATRGQPF VLAPPQCHRL FQYRTVSLTH  120
AFPVGGPGAA APGERGMPGR VFDAGTPEWT PNVQYYGTGE YARISYALIY DIQAALALPI  180
LEPDTGACLA VLELVMTSPR LRFADEVDKL CKALQAVELR GSDICCPVAE VCSDEAAEQA  240
MSEVSGVLTT VCEAHQLPLA QPWVRCKRCN STSMEHASLT TAGAPFHLSG DEGVRGFREA  300
CVEQHLREGR GGLVEGAATA RGPRFCADVT KYSMDEYPLA HHARFSGLAG CLAVCVELRR  360
DAGGEGGREE CVLEFFLPPD CSDGQAQKAA VEAVAATIRE CFGNGDLKAI ALCGSQDLAF  420
EIVADDECVL RPDRAIMADA PDPELQLDNH GRYAPDHTIM ADTPDPELQL DNHGGYVRDS  480
DDEDVHLSAA IRGADVDAPE MKNDEQKEGE DPEPQDGNSR RRRKKVVGKR KNEKTVSLEE  540
LQRYFSGRMK DAARSLGVCP TTMKRICRQH GISRWPFRQI AKANNSLDKV KRIFESVQYS  600
PQPMAAPAAS QQAPALATAH GPPAALPCLS SALGVASSQG SCQEPPPPRK RSITRKPFHA  660
GDTQGLVTVK ASYRGDIVRF RVPSFAGVEA VKGEVAKRLG LEMDAFDVKY LDDDNEWVLL  720
SCDADFQECL EVFPALSTAS SSSGSGAAQP VVRLMVQEVA DNHGSSCASS D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823617.1	0.0	protein NLP3-like
TrEMBL	A0A3L6QJT0	0.0	A0A3L6QJT0_PANMI; Uncharacterized protein
STRING	Si016430m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-102	Nin-like family protein