PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00047.1.g02470.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 205aa    MW: 21627.9 Da    PI: 4.6497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00047.1.g02470.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-184895152
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Zjn_sc00047.1.g02470.1.sm.mk 48 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAARV 95
                                  57*****998.**********843...6*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.66E-174884No hitNo description
PfamPF008471.7E-124894IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2749102IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-1849101IPR016177DNA-binding domain
PROSITE profilePS5103220.19249106IPR001471AP2/ERF domain
SMARTSM003801.1E-2849112IPR001471AP2/ERF domain
PRINTSPR003672.6E-105061IPR001471AP2/ERF domain
PRINTSPR003672.6E-107288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSEGEVYSP ASSGGATSSP PPSPTVDGGN AAARLGGEKR TRDGGRHPSY RGVRMRAWGK  60
WVSEIREPRK KSRIWLGTFP TPEMAARAHD AAARVVKGPA AHAAEPPATT SSLVGQPQQG  120
DQEELEAIVE LPRLDEDVAA ELVTFCASSS SSSWYCDDPA WMDDAGYVVP AAPAATQDDL  180
LFGLGPGLDG DHCWAQSVGA LLWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1344101967Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048574e-63AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149584e-63AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582814e-63AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951388.14e-53ethylene-responsive transcription factor ERF038
TrEMBLA0A1E5UQ322e-54A0A1E5UQ32_9POAL; Dehydration-responsive element-binding protein 3
STRINGSi018222m1e-52(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1801423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-25ERF family protein