PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00047.1.g02550.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 103aa MW: 11286.8 Da PI: 10.1331

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00047.1.g02550.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.1	2.3e-06	45	68	31	54
HHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRak 54 LA++ gLt++qV+ WF N R + Zjn_sc00047.1.g02550.1.sm.mk 45 DTLAARSGLTQTQVSCWFINARVR 68 579*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.28E-8	44	80	IPR009057	Homeodomain-like
Pfam	PF05920	1.6E-7	45	68	IPR008422	Homeobox KN domain
CDD	cd00086	1.32E-5	45	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-10	46	74	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 103 aa Download sequence Send to blast
MLASGAADAP HSISATDGRS SGRQEKIGSS EAEAHFIHSS ASLFDTLAAR SGLTQTQVSC 60 WFINARVRIW KPVLPAACRF ASAMQARRLC YARRERKVHL ELD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP65310	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	2e-10	homeobox gene 1