PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00049.1.g00500.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Whirly
Protein Properties Length: 143aa    MW: 15421.7 Da    PI: 10.2429
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00049.1.g00500.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly63.73.6e-2089141153
                        Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkq 53 
                                   s+yk+kaal+ +++ p+f+ ldsg+ k+ ++G +ll++a+a+a r+ydW +kq
  Zjn_sc00049.1.g00500.1.sm.mk  89 SIYKGKAALSFDPRPPQFVPLDSGAYKVAKEGCVLLQFAPAVASRQYDWTRKQ 141
                                   7***************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.108.8E-2777141IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.87E-2282142IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.5E-1990141IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MPPSPPLFLS LPSPALMPVH LPKSAQTVSV ASPFPSPRKP ALPACSVSSP RHSDYFDPRA  60
PPPPPPRGNG YGRPPPNGSL DGRVFTSYSI YKGKAALSFD PRPPQFVPLD SGAYKVAKEG  120
CVLLQFAPAV ASRQYDWTRK QNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A7e-24831413795p24: plant transcriptional regulator PBF-2
1l3a_B7e-24831413795p24: plant transcriptional regulator PBF-2
1l3a_C7e-24831413795p24: plant transcriptional regulator PBF-2
1l3a_D7e-24831413795p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537951e-43AK353795.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002M22.
GenBankAK3654521e-43AK365452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034E15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810386.19e-60single-stranded DNA-binding protein WHY1, chloroplastic
SwissprotB2LXS71e-59WHY1_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A3L6EAT75e-60A0A3L6EAT7_MAIZE; Single-stranded DNA-binding protein WHY1, chloroplastic
STRINGGRMZM2G155662_P017e-58(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-23ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]