PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g01030.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 236aa    MW: 26076.1 Da    PI: 10.2065
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g01030.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-15162209148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+WT+eEd +l++ +   G  +W+++++  g+ R++k+c++rw +yl
  Zjn_sc00050.1.g01030.1.am.mk 162 RGPWTAEEDRKLINFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 209
                                   89******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-21153211IPR009057Homeodomain-like
PROSITE profilePS5129419.461157213IPR017930Myb domain
SMARTSM007172.3E-12161211IPR001005SANT/Myb domain
PfamPF002492.7E-14162209IPR001005SANT/Myb domain
SuperFamilySSF466891.52E-18163236IPR009057Homeodomain-like
CDDcd001674.49E-10164209No hitNo description
Gene3DG3DSA:1.10.10.602.5E-5212236IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEPGGVHPHE EFRYGRKKTV DGMKNVTECP CFFTSSFTAI AQIHAQSPVG DEAKYQGHAN  60
VWPMILRWSA AEVSPSMHWR MEPAGAALSQ SSKPRARAGL VPALLACPRA AAFLTGARRA  120
LAGRCCSRLH AWPAGTRSSS STHRGGFGMG RQPCCDKLEV KRGPWTAEED RKLINFILTN  180
GHCCWRAVPK LAGLLRCGKS CRLRWTNYLR PDLKRGLLTE AEEQVVTDLH AKLGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-13159236177MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-1315923624100MYB TRANSFORMING PROTEIN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417711e-104BT041771.1 Zea mays full-length cDNA clone ZM_BFb0051B11 mRNA, complete cds.
GenBankBT0624371e-104BT062437.1 Zea mays full-length cDNA clone ZM_BFb0298A24 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6544622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-54myb domain protein 42