PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g01640.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 1129aa    MW: 121365 Da    PI: 8.2955
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g01640.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-21129184156
                                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  Zjn_sc00050.1.g01640.1.am.mk 129 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLESRQVKFWFQNRRTQMK 184
                                   688999***********************************************999 PP
2START27.56.8e-10345454493
                                   HHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
                         START   4 eeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWd 73 
                                   ++a++elvk+ + +ep+W   +      + +n de+ + f++  +     + +ea r+ gv +  + +lv +l+d + +W+
  Zjn_sc00050.1.g01640.1.am.mk 345 LAAMEELVKLSQIDEPLWLPGPdgssgfDTLNLDEYHRAFARVFGpspagYVSEATREAGVAITSSIDLVDSLMDAS-RWS 424
                                   789*****************9999999*************77555********************************.*** PP

                                   TT-S....EEEEEEEECTT......EEEEE CS
                         START  74 etla....kaetlevissg......galql 93 
                                   e+++    +a+t++ issg      g +ql
  Zjn_sc00050.1.g01640.1.am.mk 425 EMFPcivaRASTTDIISSGmggtrsGSIQL 454
                                   *******************88877777776 PP
3START60.94e-2048656893164
                                   EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE........-TTS--...-TTSEE-EESSEEEEEEEECTCEE CS
                         START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd........seqkppe..sssvvRaellpSgiliepksnghs 162
                                   +m aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd        ++ + p+   ++++ ++llpSg++++++ ng+s
  Zjn_sc00050.1.g01640.1.am.mk 486 QMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDailrpdgpQRHNHPSggAAGYMGCRLLPSGCIVQDMNNGYS 566
                                   799************************************95554444323333336999********************** PP

                                   EE CS
                         START 163 kv 164
                                   kv
  Zjn_sc00050.1.g01640.1.am.mk 567 KV 568
                                   *8 PP
4START34.45.3e-12805847163205
                                   EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                         START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                   +vtwv h+++++  +h+l+r+l++sg+a ga++w+a lqrqce
  Zjn_sc00050.1.g01640.1.am.mk 805 QVTWVVHAEYDEVAVHQLYRPLLRSGQALGARRWLASLQRQCE 847
                                   79****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.14E-21116186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-22120186IPR009057Homeodomain-like
PROSITE profilePS5007118.253126186IPR001356Homeobox domain
SMARTSM003898.7E-20127190IPR001356Homeobox domain
PfamPF000465.6E-19129184IPR001356Homeobox domain
CDDcd000861.03E-19129186No hitNo description
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PROSITE profilePS5084826.809333568IPR002913START domain
SuperFamilySSF559611.65E-16338445No hitNo description
CDDcd088755.68E-74339568No hitNo description
SMARTSM002343.3E-6342604IPR002913START domain
SuperFamilySSF559611.65E-16485568No hitNo description
PfamPF018527.1E-15486568IPR002913START domain
PfamPF018522.8E-8805847IPR002913START domain
PROSITE profilePS5084810.098805851IPR002913START domain
SuperFamilySSF559615.49E-158671112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MSFGGMFDGS GVFSYDAGGG GSGTHNPGQF TPAPPHIPKP GGGFASPGLS LGLVVLDFLQ  60
TNMEGGQLGD VSRLGLMGSG GSGSLGDGDS LGRSAREDEN DSRSGSDNLD GASGDDLDPD  120
NGNPRQKKKK RYHRHTPQQI QELEAVFKEC PHPDEKQRME LSKRLNLESR QVKFWFQNRR  180
TQMKTQIERH ENALLRQEND KLRADNMTIR EAMRNPMCAS CGGAAVLGEV SLEEQHLRIE  240
NARLKDELDR VCALAAKFLG RPISSGSPVS SLQGCSGLEL GVGTNGFGLG LLGAPSLPPI  300
PDLMGGPVGS SALRLPAGIG GLDAGAMHGG AADGVDRTVL LELGLAAMEE LVKLSQIDEP  360
LWLPGPDGSS GFDTLNLDEY HRAFARVFGP SPAGYVSEAT REAGVAITSS IDLVDSLMDA  420
SRWSEMFPCI VARASTTDII SSGMGGTRSG SIQLVSCLAT SPSRNETLEN SRAIPPRNAM  480
MWKRMQMHAE LQVLSPLVPI REVVFLRFCK QHAEGLWAVV DVSVDAILRP DGPQRHNHPS  540
GGAAGYMGCR LLPSGCIVQD MNNGYSKVPA CGGHSARVTR AFSTSRPRST AQYFMLLRVR  600
ACRVVRGGYV CEVVSSPPRP ARSAPWRPAR CARVNAIVAS ACAQTWVVVN PIHDLLLVVD  660
LVCFLCLSLL EYTVVQYQYE STRLARVLQW STGGFHLLSP CLFSHDDQQR CCGACVPQRL  720
SSCVMVYAVD RSRRGRLLRV FYRRRVTGCW CKRRAALFYL PPPSLPCPAP SGAKWPSIRG  780
HRRDGPFVLC VRANAAAFCT VRAPQVTWVV HAEYDEVAVH QLYRPLLRSG QALGARRWLA  840
SLQRQCEYLA ILCSNSLPAR DHAAITPVGR RSMLKLAQRM TDNFCAGVCA SAAQKWRRLD  900
EWRGGGGEGG GGNAGEEKVR MMARQSVGAP GEPPGVVLSA TTSVRLPATP PQRVFDYLRD  960
EQRRGEWDIL ANGEAMQEMD HIAKGQHHGN AVSLLRPNAT SGNQNNMLIL QETCTDSSGS  1020
LVVYAPVDVQ SMHVVMNGGD SAYVSLLPSG FAILPDGHSP PSNPAQGSPN GASSASGSTG  1080
SLVTVAFQIL VNSLPTAKLT VESVDTVSNL LSCTIQKIKS ALQASIVSP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509850.0AJ250985.1 Zea mays mRNA for OCL3 protein (ocl3 gene).
GenBankKJ7285220.0KJ728522.1 Zea mays clone pUT6827 HB transcription factor (HB14) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462701.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLC5X6400.0C5X640_SORBI; Uncharacterized protein
STRINGSb02g030470.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.21e-147HD-ZIP family protein