PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g02270.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 586aa    MW: 62442 Da    PI: 7.956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g02270.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11117165455
                                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     +h ++Er+RR+++ + ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Zjn_sc00050.1.g02270.1.sm.mkhc 117 SHIAVERNRRKQMTEHLAVLRSLMPCF---YVKRGDQASIIGGVVNYIKELQ 165
                                     799***********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.827113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-15116181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-9117165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.37E-12117169No hitNo description
Gene3DG3DSA:4.10.280.101.3E-11117177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11119170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MAEVLCDQLF ADDDVVNGEL LQHPADADDL FGILQEWEDC VSGGSVEAAL SSAADAATPT  60
SVAAKGNKRR SPQGRCDDSV LVQEPAKKQR CAPPAVAVAA ATTGEGGATK TATTSHSHIA  120
VERNRRKQMT EHLAVLRSLM PCFYVKRGDQ ASIIGGVVNY IKELQQLLQS LEAKKQRKAY  180
ADQLVLSPRR PLPLKSTPPM SPRPAVPIIS PRTPPTSSSP YSTLRRQPSL PLLHLPLPLP  240
PPRGSSAYES PAMTPTSQES AASSSSSSSY LPSLDAIAAE LCAYTANSKQ ATASGGAVVL  300
PEVKVEFSGA NLVVKTASQR APGQAVKVIA ALEDRSSLEI LHAKISTVDD TALNSFTIKI  360
GIECGLSAEE LLVTRKHQGL EICGNLGPAW RIASFGLWAP TTRSAQREKL RSPSPAESAG  420
RIWAVLVICI RTHHADGPIE PAADPSPLRP APRRRLQLST AGGRGRAAES CVRGQMSSGG  480
MNAVFYADKY HPIQAGSIDG TDIAPHDNAV LRALICSQAG LYDPFGDPKA TGDPYCTLFV  540
GRLSRQTDDE MFRKEVGLEE RKNLVNCGLE VEKGHFVLPC STTTQM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0667507e-70BT066750.1 Zea mays full-length cDNA clone ZM_BFb0065E21 mRNA, complete cds.
GenBankEU9533467e-70EU953346.1 Zea mays clone 1400990 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659639.11e-133transcription factor SPEECHLESS
TrEMBLA0A1E5UP881e-133A0A1E5UP88_9POAL; Transcription factor SPEECHLESS
STRINGGRMZM2G045109_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.18e-33bHLH family protein