PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00050.1.g02480.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 570aa    MW: 59293.2 Da    PI: 5.1659
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00050.1.g02480.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29351409259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D+++WrKYGqK++kgs+fpr+YY+Cts+ +Cp++k+ve+s++dp+++++ Y+geH h+
  Zjn_sc00050.1.g02480.1.am.mk 351 SDKWSWRKYGQKPIKGSPFPRGYYKCTSNkDCPARKQVEQSSSDPNTLIVSYTGEHCHS 409
                                   79**************************99***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081129.298345411IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-29345411IPR003657WRKY domain
SuperFamilySSF1182901.83E-25346411IPR003657WRKY domain
SMARTSM007746.5E-35350410IPR003657WRKY domain
PfamPF031062.2E-24352408IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MMGGPFGPTL PASARALVPG LPGLQDDAWG TLHLPSGPRD QSDHRKPCMQ AAAAGSAICP  60
GSGGPRVYVH AKGRGQRAPH GPHVSASAWA MARPAGARSA QSGVGPDGYE PARPDQPLVG  120
MAANRPSIVL YNEDPSPPSL SHSHRSAPPL PSIIEEAREL DRGAGPMEGD GGWHYGGHGY  180
NNWDLDAVVR LGGGGGNAAL EPFQDDPILA LLQPQQDVLP GALPPPQQDV MPDALPQQQL  240
GVLPDANPWQ ELQGAMDLPM AADPAFADLD AFLSDPVFAA PQSPPPPSQR NEAPAPQQAP  300
AAEPPALGKA AAEPSSDAGA GSSRPKHARR SRKDMEAKYV VTVPAPYLPS SDKWSWRKYG  360
QKPIKGSPFP RGYYKCTSNK DCPARKQVEQ SSSDPNTLIV SYTGEHCHSP PTNRNSRAGI  420
MRSSSRAPVA AGGGGSASQP AAPQLVLPAP AAAAPPPAPP RSVYMDFGKD DDDALALQAL  480
IDDAVLAPEN AFLFLNPDYV APAPVNAAGD EGNQPLPIPL ENMATDVSRG TGSGTDGGQA  540
RIPTNVAMDC FFGSPWEAAW PEAAPGPWGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-17334412280Disease resistance protein RRS1
5w3x_D1e-17334412280Disease resistance protein RRS1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3493034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.19e-31WRKY family protein