PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00051.1.g02750.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 421aa    MW: 45455.4 Da    PI: 9.1505
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00051.1.g02750.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.91.1e-12238294155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Zjn_sc00051.1.g02750.1.am.mk 238 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 294
                                   78*******************77776664346655.77******************98 PP
2AP222.52.8e-07339369336
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                                   y+GV+++++ grW A+I  +s    +k  +lg+f
  Zjn_sc00051.1.g02750.1.am.mk 339 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTF 369
                                   9***************999754...4******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-14238303IPR016177DNA-binding domain
PfamPF008476.4E-10238294IPR001471AP2/ERF domain
CDDcd000181.26E-17238302No hitNo description
SMARTSM003808.3E-23239308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-13239303IPR001471AP2/ERF domain
PROSITE profilePS5103217.359239302IPR001471AP2/ERF domain
PRINTSPR003673.4E-5240251IPR001471AP2/ERF domain
PRINTSPR003673.4E-5284304IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-5337371IPR016177DNA-binding domain
SMARTSM003800.0051338381IPR001471AP2/ERF domain
PROSITE profilePS510328.992338369IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-5338371IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MTNTNNGGNS GGGSANNGGT NAAASGWLGF SLSPHMASSM DDHHHHHHHV QQQQHNHHHG  60
IFFPSVAAAY GLGGAGDAAV ATSGPYYAPQ LASMPLKSDG SLCIMEALRR TDQDHHGPKL  120
EDFLGAAQSQ AMALSLDNGS SFYHYGGVGV GHHHGGLLQP DAYVGPSAAP TLMADDEEAA  180
AAAATAMASW GGGEYGVLAS AAAAAAMDGG RKRGGAAGQQ KQPVHHRKSI DTFGQRTSQY  240
RGVTRHRWTG RYEAHLWDNS CKKEGQTRKG RQGGYDMEEK AARAYDLAAL KYWGPSTHIN  300
FPLEDYQEEL EEMKNMTRQE YVAHLRRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVSG  360
NKDLYLGTFR HSATPCPTVA MISRVYTACM PTGDPFAGRP AGRVRTDVDR VILIPDHRVR  420
V
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882631e-126BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008651822.11e-155putative AP2/EREBP transcription factor superfamily protein isoform X1
SwissprotQ84Z021e-105CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A3L6E2X11e-158A0A3L6E2X1_MAIZE; AP2-like ethylene-responsive transcription factor ANT
STRINGPavir.Ba03911.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.18e-94AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]