PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00052.1.g01150.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 77aa MW: 8886.48 Da PI: 9.2586

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00052.1.g01150.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34	4.8e-11	11	30	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ Zjn_sc00052.1.g01150.1.am.mkhc 11 YYLKTGTCKFGATCKFHHPR 30 8*****************96 PP
2	zf-CCCH	18.6	3.4e-06	52	70	3	21
S---SGGGGTS--TTTTT- CS zf-CCCH 3 telCrffartGtCkyGdrC 21 +++C ++ rtG+Ck+G +C Zjn_sc00052.1.g01150.1.am.mkhc 52 EKECAYYIRTGQCKFGMTC 70 679*************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00642	5.5E-9	11	30	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.577	11	31	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-5	11	31	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.18E-5	11	32	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.155	49	70	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MVSAIIIYLL YYLKTGTCKF GATCKFHHPR EKAGMANRVQ WNSLGYPLRP NEKECAYYIR 60 TGQCKFGMTC SDWLVVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141157.1	7e-34	Zinc finger CCCH domain-containing protein 33
Refseq	XP_029122312.1	7e-34	zinc finger CCCH domain-containing protein ZFN-like isoform X2
Refseq	XP_029122313.1	6e-34	zinc finger CCCH domain-containing protein ZFN-like isoform X4
Swissprot	Q2R4J4	5e-33	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A0E0F5M4	4e-33	A0A0E0F5M4_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0MFC8	7e-33	A0A0E0MFC8_ORYPU; Uncharacterized protein
STRING	OPUNC11G11150.1	1e-33	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP34972	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	3e-31	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]