PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00052.1.g01160.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 119aa MW: 12435.9 Da PI: 5.5676

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00052.1.g01160.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37	5.8e-12	60	84	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG C++G +CkF+H+p Zjn_sc00052.1.g01160.1.sm.mkhc 60 EPDCSYYMRTGLCRFGMTCKFNHPP 84 799********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	7.1E-5	57	84	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.619	57	85	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.1E-9	60	84	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-6	62	85	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-5	63	83	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MAALSAGAGA GGGGGEGSSS AAAASATIET HGVHEVAEAM WQMNLGEAAE SGPYPERVGE 60 PDCSYYMRTG LCRFGMTCKF NHPPDRKLAV AAARMKGEYP QRTSQPECQL DGLMKHSLD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT018914	2e-72	BT018914.1 Zea mays clone EL01T0403G12.d mRNA sequence.
GenBank	BT040571	2e-72	BT040571.1 Zea mays full-length cDNA clone ZM_BFc0101B05 mRNA, complete cds.
GenBank	BT067452	2e-72	BT067452.1 Zea mays full-length cDNA clone ZM_BFc0051N01 mRNA, complete cds.
GenBank	JX428473	2e-72	JX428473.1 Zea mays subsp. mays clone pUT3069 C3H11 C3H type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001141157.1	2e-45	Zinc finger CCCH domain-containing protein 33
Swissprot	Q2R4J4	9e-44	C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBL	A0A3L6Q1A7	3e-44	A0A3L6Q1A7_PANMI; Zinc finger CCCH domain-containing protein 63 isoform X1
TrEMBL	I1R036	2e-44	I1R036_ORYGL; Uncharacterized protein
STRING	ORGLA11G0112800.1	3e-45	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25763	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	6e-34	zinc finger protein 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]