PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00053.1.g02230.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 984aa MW: 107037 Da PI: 11.225

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00053.1.g02230.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.3e-17	858	907	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a+++++g Zjn_sc00053.1.g02230.1.am.mk 858 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 907 69**998.******843...6*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.200.20	0.001	2	33	No hit	No description
SuperFamily	SSF56112	2.6E-5	2	46	IPR011009	Protein kinase-like domain
PROSITE profile	PS51032	23.393	858	915	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-31	858	916	IPR001471	AP2/ERF domain
SMART	SM00380	6.2E-36	858	921	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	8.5E-21	858	916	IPR016177	DNA-binding domain
Pfam	PF00847	1.4E-11	858	907	IPR001471	AP2/ERF domain
CDD	cd00018	4.76E-28	859	917	No hit	No description
PRINTS	PR00367	1.3E-9	859	870	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-9	881	897	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 984 aa Download sequence Send to blast
LAELGTVGHA RHPNLCALLG CCVDCDLYLV FEFSCRGSVY ANLQVHRTRG VAADGVGRRG 60 VAAPRLPQAS VPPAAGDLDG SGEGDGVGRW RCKGAPRAAE LWARLSARIR RAALRGLRWA 120 ARRRLKALSG GAYILPLLLP SCLTLPLLLR SCLKPATPTL KPTTVDLDGC TTPRPGSERP 180 AGPWALARAI GRDTQQAPVR QPCEYGVHQR IQLCHFVERA TGVAHTSRAE QRADTKTCRR 240 RPLQVEMSQS YLRAPRARRC MNAFLEKPAR HRRDFSTSRC LFFFPALSVS WGAAIVVRRR 300 GLYGTVVPVV FIEERTPGKV KTCRPEKGVL TATLVWSCSK TRNNQPCYDA ATLLQRGNGG 360 ARSTWTGKEE YRQWVAPHET AAQEEGETGH NRTRSGRGWT KRLSPIPYLR RVDGERGRRR 420 QWPADAGIAH HDARRRAAGR ARERARNVPG AHGEQARRQG TGGRYSRHMP PSTHPDPSVP 480 WRSAAVTRTG APGTGRQPRC VNQRVALDMS WPWRRRPVSF SLFPPNVPSP RKSRSRVKPK 540 RHGIVGTATR APPHMPHPTK RVPGRVTHTL LGVSPSTGPG RTAATRAPAG EHRERACRLD 600 RVELTKQERQ DLPRMWRYLA SRDRSPAVLI KYAVSGNPMT PPPKVPIMDA LSAAKIQGNG 660 RGGRSQGVQW AKQIHVPQSA GDVLSRPYAL LRRTCMLAGP RFATCATVAQ HIIDLSGVPL 720 AGCGELHGRC LAGLGMCCVS PARLQGTEHR GVQQPTVSPG PISREVVMVQ ELQETSSSSS 780 ATTSSCTACS TASCSSTVTD SSSSPALPAE ANATPAPRKR QAAEAEAETG GENEEEEGCA 840 VKAMAKKRKR SSEGKHPTYR GVRMRAWGKW VSEIREPRKK SRIWLGTFPT AEMAARAHDV 900 AALAIKGRAA HLNFPDLTGV LPRAASAAPK DVQAAAALAA AFTTDPETAA TTAPCHPQQE 960 PANNKAAAQE VNAELRLEEP LLWE

Sequence ? help Back to Top

Protein Sequence Length: 984 aa Download sequence Send to blast

LAELGTVGHA RHPNLCALLG CCVDCDLYLV FEFSCRGSVY ANLQVHRTRG VAADGVGRRG  60
VAAPRLPQAS VPPAAGDLDG SGEGDGVGRW RCKGAPRAAE LWARLSARIR RAALRGLRWA  120
ARRRLKALSG GAYILPLLLP SCLTLPLLLR SCLKPATPTL KPTTVDLDGC TTPRPGSERP  180
AGPWALARAI GRDTQQAPVR QPCEYGVHQR IQLCHFVERA TGVAHTSRAE QRADTKTCRR  240
RPLQVEMSQS YLRAPRARRC MNAFLEKPAR HRRDFSTSRC LFFFPALSVS WGAAIVVRRR  300
GLYGTVVPVV FIEERTPGKV KTCRPEKGVL TATLVWSCSK TRNNQPCYDA ATLLQRGNGG  360
ARSTWTGKEE YRQWVAPHET AAQEEGETGH NRTRSGRGWT KRLSPIPYLR RVDGERGRRR  420
QWPADAGIAH HDARRRAAGR ARERARNVPG AHGEQARRQG TGGRYSRHMP PSTHPDPSVP  480
WRSAAVTRTG APGTGRQPRC VNQRVALDMS WPWRRRPVSF SLFPPNVPSP RKSRSRVKPK  540
RHGIVGTATR APPHMPHPTK RVPGRVTHTL LGVSPSTGPG RTAATRAPAG EHRERACRLD  600
RVELTKQERQ DLPRMWRYLA SRDRSPAVLI KYAVSGNPMT PPPKVPIMDA LSAAKIQGNG  660
RGGRSQGVQW AKQIHVPQSA GDVLSRPYAL LRRTCMLAGP RFATCATVAQ HIIDLSGVPL  720
AGCGELHGRC LAGLGMCCVS PARLQGTEHR GVQQPTVSPG PISREVVMVQ ELQETSSSSS  780
ATTSSCTACS TASCSSTVTD SSSSPALPAE ANATPAPRKR QAAEAEAETG GENEEEEGCA  840
VKAMAKKRKR SSEGKHPTYR GVRMRAWGKW VSEIREPRKK SRIWLGTFPT AEMAARAHDV  900
AALAIKGRAA HLNFPDLTGV LPRAASAAPK DVQAAAALAA AFTTDPETAA TTAPCHPQQE  960
PANNKAAAQE VNAELRLEEP LLWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-16	855	915	11	72	Ethylene-responsive transcription factor ERF096

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	845	850	KKRKRS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF314703	1e-152	KF314703.1 Setaria italica clone SiDREB hypothetical protein mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP65594	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44940.1	6e-37	ERF family protein