PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00053.1.g02600.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 244aa MW: 26814.1 Da PI: 9.0759

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00053.1.g02600.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.4e-15	94	138	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ k lG+g+W+ I++ + ++Rt+ q+ s+ qky Zjn_sc00053.1.g02600.1.sm.mkhc 94 PWTEEEHRKFLDGLKHLGKGDWRGISKNFVTTRTATQVASHAQKY 138 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.142	87	143	IPR017930	Myb domain
SuperFamily	SSF46689	6.6E-18	89	143	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-18	91	142	IPR006447	Myb domain, plants
SMART	SM00717	7.5E-11	91	141	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-11	93	137	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-12	94	138	IPR001005	SANT/Myb domain
CDD	cd00167	3.47E-10	94	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MERRGPDEGR TQALPPVSFR LFGTDVRLPG EEADEDAGPV EMKKCSSMPN LTYNRLLPTG 60 EAGKGYASDD GDLATPQQKH RRRKAQERKK GGVPWTEEEH RKFLDGLKHL GKGDWRGISK 120 NFVTTRTATQ VASHAQKYFL RQTNPGKKKR RASLFDVGIT DYNNDQVLGS ENIANKPAPT 180 EEIIHTDRGD VPRPKAHAES SFASMACGLE PASSISSLEL SIAVNSLDLS IEPPRGAAEP 240 IKVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	89	KHRRRKAQERKK
2	146	150	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251610	2e-90	AK251610.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129a20, mRNA sequence.
GenBank	AK362457	2e-90	AK362457.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005J10.
GenBank	AK370274	2e-90	AK370274.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108A12.
GenBank	AK373165	2e-90	AK373165.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3022M03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983632.1	1e-102	transcription factor MYBS2
Swissprot	B8BI93	9e-68	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	9e-68	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A0A9KKT0	1e-112	A0A0A9KKT0_ARUDO; Uncharacterized protein
STRING	Si036966m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-34	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]