PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00055.1.g00650.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 255aa    MW: 27824.2 Da    PI: 9.0305
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00055.1.g00650.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.43.1e-45111421128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                     lppGfrF+Ptdeel+v+yL++++ +++l+++  i++++i+ ++P+dL p     +e e yfF++++ ky +g+r+nrat
  Zjn_sc00055.1.g00650.1.sm.mkhc  11 LPPGFRFRPTDEELIVHYLRRRAFASPLPAAVDIPDIRILAHDPSDLlP--PGWNEPERYFFTCKEAKYVKGRRANRAT 87 
                                     79***************************9666**************43..3446789********************* PP

                             NAM  79 ksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                      +gyWkatgk+k+v ++     +  lvg+k++Lvfy+gr p+g+ktdWvmheyrl
  Zjn_sc00055.1.g00650.1.sm.mkhc  88 GAGYWKATGKEKPVAVAapggnQAVLVGMKRSLVFYRGRPPSGSKTDWVMHEYRL 142
                                     **************999897655666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-508173IPR003441NAC domain
PROSITE profilePS5100549.711173IPR003441NAC domain
PfamPF023652.9E-2612142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDAKEVVRRR LPPGFRFRPT DEELIVHYLR RRAFASPLPA AVDIPDIRIL AHDPSDLLPP  60
GWNEPERYFF TCKEAKYVKG RRANRATGAG YWKATGKEKP VAVAAPGGNQ AVLVGMKRSL  120
VFYRGRPPSG SKTDWVMHEY RLAGAGLAPC RRAQAGEASR ADEGWVLCRV FRKRGSSASD  180
GTAPAEADAD AERGAEEEGE GDDAAPASGF IDFFARADRQ RRRRASSPVV TVSSSCLTDA  240
SHECRDQDTT SGGCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-37617712169NO APICAL MERISTEM PROTEIN
1ut4_B1e-37617712169NO APICAL MERISTEM PROTEIN
1ut7_A1e-37617712169NO APICAL MERISTEM PROTEIN
1ut7_B1e-37617712169NO APICAL MERISTEM PROTEIN
4dul_A1e-37617712169NAC domain-containing protein 19
4dul_B1e-37617712169NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217223DRQRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919151e-108FP091915.1 Phyllostachys edulis cDNA clone: bphyem115l12, full insert sequence.
GenBankFP0991851e-108FP099185.1 Phyllostachys edulis cDNA clone: bphyem106m22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809222.11e-111NAC domain-containing protein 83
SwissprotQ9FY939e-54NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A3L6RAA21e-119A0A3L6RAA2_PANMI; NAC domain-containing protein 83
STRINGSb08g014060.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-47NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]