PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00055.1.g01460.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25419.1 Da    PI: 6.3756
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00055.1.g01460.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-231260250
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                                  rien   rqvtfskRr g+ KKA EL vLCd++va+++fs +gk+++++
  Zjn_sc00055.1.g01460.1.sm.mk 12 RIENAVSRQVTFSKRRRGLAKKARELAVLCDVDVALLLFSDKGKFHDFA 60
                                  8**********************************************97 PP
2K-box58.43.1e-20871531177
                         K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 
                                   ++ +e+++ ++  L++++e Lqr+ R+l+Ge+L++L+++e qqLeqq+e +l++iRs+K+++l+eq 
  Zjn_sc00055.1.g01460.1.sm.mk  87 HELQENMSYDSIMLRSRMEALQRSERNLMGEQLDTLTVREVQQLEQQIEIALRNIRSRKEKMLTEQK 153
                                   455789999999****************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.553363IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-28362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-27489IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-25525IPR002100Transcription factor, MADS-box
PfamPF003195.9E-231259IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-254061IPR002100Transcription factor, MADS-box
PfamPF014861.6E-1686152IPR002487Transcription factor, K-box
PROSITE profilePS5129711.45990180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGRGRGRVEV RRIENAVSRQ VTFSKRRRGL AKKARELAVL CDVDVALLLF SDKGKFHDFA  60
AHGSLDQILD RYERYLFSEA GDVMEEHELQ ENMSYDSIML RSRMEALQRS ERNLMGEQLD  120
TLTVREVQQL EQQIEIALRN IRSRKEKMLT EQKIILEKVS VHPTSKLALL YIDFLQLNLL  180
IIWLTNHSSD DSDEPGPAST APPERPSDLP WWMLRPSAEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A4e-15475171MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B4e-15475171MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C4e-15475171MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D4e-15475171MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A6e-15475171Myocyte-specific enhancer factor 2A
3kov_B6e-15475171Myocyte-specific enhancer factor 2A
3kov_I6e-15475171Myocyte-specific enhancer factor 2A
3kov_J6e-15475171Myocyte-specific enhancer factor 2A
3p57_A6e-15475171Myocyte-specific enhancer factor 2A
3p57_B6e-15475171Myocyte-specific enhancer factor 2A
3p57_C6e-15475171Myocyte-specific enhancer factor 2A
3p57_D6e-15475171Myocyte-specific enhancer factor 2A
3p57_I6e-15475171Myocyte-specific enhancer factor 2A
3p57_J6e-15475171Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962945.15e-85MADS-box transcription factor 20
SwissprotQ2QQA33e-65MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA0A368QMZ81e-83A0A368QMZ8_SETIT; Uncharacterized protein
STRINGSi025315m4e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-34AGAMOUS-like 8