PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00057.1.g00340.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 307aa MW: 33600.7 Da PI: 9.963

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00057.1.g00340.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.7	2e-08	121	146	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ ++G CkyG C F+H+ Zjn_sc00057.1.g00340.1.am.mk 121 PGEPDCSYYVKFGSCKYGMDCWFNHP 146 5789*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.0E-4	120	147	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.347	120	148	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-5	122	146	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.18E-5	125	149	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MLAAEPTASA GIAKKQSMPS ALRKGTTKRN PRAGHGPSKD LTPRPGLAPS TGLPSLLPLH 60 KLCSIGSCKH RMAYSFNHPA KPSVWQSRHA RASEQLVHDS VYPRRPGKPD CSYYSVYPRR 120 PGEPDCSYYV KFGSCKYGMD CWFNHPLHEP MAVVKDVGHQ ESSKRPNTTM RATKSGYLRW 180 AIDGSLNLTV LGRLALQSTV VIPKEFGQFP VDSPTQKLFG ALLDGVIVGG ALVNSVEDLV 240 LRDGRLLFSP FDLSHVGDQP EPYRVTVDAC APCTGISVQG TPARHPFPAL LLLPLSSLRF 300 PNLWRPI

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP22347	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-11	zinc finger protein 1