PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00058.1.g01920.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 176aa    MW: 18881.2 Da    PI: 4.8628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00058.1.g01920.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-172776255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr +k +g+Wv eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Zjn_sc00058.1.g01920.1.sm.mk 27 QYRGVRKRK-WGKWVTEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 76
                                  69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-212785IPR016177DNA-binding domain
PROSITE profilePS5103223.4062784IPR001471AP2/ERF domain
SMARTSM003801.2E-352790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-302785IPR001471AP2/ERF domain
PRINTSPR003675.7E-102839IPR001471AP2/ERF domain
CDDcd000182.44E-282884No hitNo description
PfamPF008472.2E-112876IPR001471AP2/ERF domain
PRINTSPR003675.7E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAATDLLLLP ATSTIAGGGG GGSGQQQYRG VRKRKWGKWV TEIRQPGTKT RIWLGSFESA  60
EMAAVAHDVA ALRLRGRDAQ LNFPGSAADR VRREPALVAE ARCHEALYEF GGLQAGPGRA  120
GELAGSDEEF DLDLGSPRLW AEMAEAMLLD PPRWDTGVSD AEVAQCWSPG SLWDAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-172684463ATERF1
3gcc_A9e-172684463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9581356e-71EU958135.1 Zea mays clone 1674836 dehydration-responsive element-binding protein 1D mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823072.17e-67ethylene-responsive transcription factor ERF027-like
TrEMBLA0A0A9BXV12e-71A0A0A9BXV1_ARUDO; Uncharacterized protein
STRINGTRIUR3_32168-P16e-57(Triticum urartu)
STRINGLPERR04G10650.12e-56(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-21ERF family protein