PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00058.1.g02370.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 227aa    MW: 24395.5 Da    PI: 9.8994
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00058.1.g02370.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.41.6e-282574558
                   ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                                  +YkeC++NhAa++Gg+a+DGCgEfmp+      ++ lkCaACgCHR+FHRr  +
  Zjn_sc00058.1.g02370.1.sm.mk 25 KYKECMRNHAAAIGGQAFDGCGEFMPA----DAPDPLKCAACGCHRSFHRRAAV 74
                                  7*************************9....4689****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-182571IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.7E-242572IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-242572IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.1512672IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.14E-19115188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-29118189IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-26129186IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMKHLSLVPY EGGSSGGNSG GGGDKYKECM RNHAAAIGGQ AFDGCGEFMP ADAPDPLKCA  60
ACGCHRSFHR RAAVAGSAFL PSAPVAPPHL ALPYHAVPWN VRAGSETPPR PEDFGGTGGG  120
GSGSGSVGRK RFRTKFTPEQ KERMREFAEQ QGWRINRNDD GALDRFCHEI GVRRQVLKVW  180
MHNHKNHHNH HGQKMMSNSH LVASVPNPAA AGQGTPLLAS QCSRLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-231301861874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9732352e-58EU973235.1 Zea mays clone 395249 ZF-HD homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825199.15e-80zinc-finger homeodomain protein 8-like
SwissprotQ7X7N39e-67ZHD8_ORYSJ; Zinc-finger homeodomain protein 8
TrEMBLA0A3L6Q4R37e-79A0A3L6Q4R3_PANMI; Zinc-finger homeodomain protein 8-like
STRINGOMERI04G10740.14e-70(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-43zinc finger homeodomain 1