PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00058.1.g02770.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 213aa    MW: 21998.5 Da    PI: 4.515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00058.1.g02770.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.31.7e-1268105243
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAa 43 
                                   +y+GVr+++ +g+W+AeIrdp     + +r++lg+   a   a
  Zjn_sc00058.1.g02770.1.sm.mk  68 KYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTEAEAAATA 105
                                   8********.**********93....36****99655522222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.9E-1767115IPR001471AP2/ERF domain
CDDcd000184.33E-146896No hitNo description
SMARTSM003801.7E-1168129IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-1068112IPR016177DNA-binding domain
PROSITE profilePS5103215.85768128IPR001471AP2/ERF domain
PfamPF008473.4E-768107IPR001471AP2/ERF domain
PRINTSPR003673.2E-76980IPR001471AP2/ERF domain
PRINTSPR003673.2E-791107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MCEQSKSKTS MGCSEQALAV ENAVIVSALT HVVANGRAPA PELPMPWAAD SGGVVAQGQL  60
HAPAPARKYR GVRQRPWGKW AAEIRDPQKA ARVWLGTEAE AAATAAAAPA VLLESQAAGD  120
VMDYLEYSRI LEADDEPSAI VDGLLGGDVN GCFLGSWSIG TSPPSSSASG AGSATPLFPG  180
WSGGKQSSSS PFGEKGVAEE FLFHSGDENN CQL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032866e-31AP003286.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0677H08.
GenBankAP0149576e-31AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126096e-31CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684509.12e-48ethylene-responsive transcription factor RAP2-6-like
TrEMBLA0A3L6QA861e-48A0A3L6QA86_PANMI; Uncharacterized protein
STRINGPavir.J15316.1.p5e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142992022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-16ERF family protein