PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00059.1.g00220.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 324aa    MW: 34677.9 Da    PI: 9.4271
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00059.1.g00220.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-19181235256
                                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                     rk+ +++k+q  +Lee F+++++++ ++++ LAk+l+L+ rqV vWFqNrRa+ k
  Zjn_sc00059.1.g00220.1.sm.mkhc 181 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTK 235
                                     788899***********************************************98 PP
2HD-ZIP_I/II126.41.3e-40181270191
                     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 
                                     +kk+rlsk+q+++LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+r
  Zjn_sc00059.1.g00220.1.sm.mkhc 181 RKKLRLSKDQAAVLEESFKEHNTLNPKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCFESLTEENRR 259
                                     69***************************************************************************** PP

                     HD-ZIP_I/II  80 LekeveeLreel 91 
                                     L++ev+eLr +l
  Zjn_sc00059.1.g00220.1.sm.mkhc 260 LQREVAELR-AL 270
                                     ********9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.7E-2216150IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.3E-19166231IPR009057Homeodomain-like
SuperFamilySSF466898.77E-19169238IPR009057Homeodomain-like
PROSITE profilePS5007117.281177237IPR001356Homeobox domain
SMARTSM003894.0E-17179241IPR001356Homeobox domain
CDDcd000861.20E-17181238No hitNo description
PfamPF000467.4E-17181235IPR001356Homeobox domain
PROSITE patternPS000270212235IPR017970Homeobox, conserved site
PfamPF021835.4E-11237271IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.6E-23237280IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMVNASRGEE QYHNLGLGLS LSLGIATAAA PVESPPQQPQ HQQKSALSVA PVPAQQLRQC  60
CNGFSAGFFF SPSTGIDRSL FERKPQQQQA APAPAAACHG HEMPFLRGID VNRAPAGEIS  120
RRGSCSEDEE PGASSPNSTL SRLSGKRGAP ARSGGGEGDR TPRAGGGGSD DEDSGAGGGS  180
RKKLRLSKDQ AAVLEESFKE HNTLNPKQKA ALAKQLNLKP RQVEVWFQNR RARTKLKQTE  240
VDCEFLKRCF ESLTEENRRL QREVAELRAL KLVAPHHYGS TPPPTTLTMC PACERVAGSS  300
ADGASPWGPA PARPVFVDGP ARRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185SRKKLRL
2229237RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}.
UniProtProbable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}.
UniProtINDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424521e-174EU942452.1 Zea mays clone 1503625 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795353.11e-145homeobox-leucine zipper protein HOX1-like
SwissprotQ406914e-82HOX1_ORYSI; Homeobox-leucine zipper protein HOX1
SwissprotQ7XC544e-82HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1
TrEMBLA0A3L6THC51e-148A0A3L6THC5_PANMI; Homeobox-leucine zipper protein HOX1 isoform X2
STRINGPavir.Ia02217.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.19e-73Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Scarpella E,Boot KJ,Rueb S,Meijer AH
    The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.
    Plant Physiol., 2002. 130(3): p. 1349-60
    [PMID:12428000]
  2. Scarpella E,Rueb S,Meijer AH
    The RADICLELESS1 gene is required for vascular pattern formation in rice.
    Development, 2003. 130(4): p. 645-58
    [PMID:12505996]
  3. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  4. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  5. Scarpella E,Simons EJ,Meijer AH
    Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis.
    Plant Cell Physiol., 2005. 46(8): p. 1400-10
    [PMID:15964905]
  6. Meijer AH,Ouwerkerk PB,Hoge JH
    Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast.
    Yeast, 1998. 14(15): p. 1407-15
    [PMID:9848232]