PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00059.1.g00310.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 187aa    MW: 21000.8 Da    PI: 10.8472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00059.1.g00310.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-13147187245
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45 
                                   +y+GVr+++ +g++ AeIrdp+      r++lg+++ta eA +a
  Zjn_sc00059.1.g00310.1.am.mk 147 RYRGVRQRP-WGKYTAEIRDPTRK--GPRVWLGTYDTAAEATRA 187
                                   7********.**********8432..3*************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-8147187IPR001471AP2/ERF domain
PROSITE profilePS5103217.938147187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.1E-19147187IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-13147187IPR016177DNA-binding domain
CDDcd000184.91E-16147187No hitNo description
SMARTSM003801.3E-7147187IPR001471AP2/ERF domain
PRINTSPR003675.5E-10148159IPR001471AP2/ERF domain
PRINTSPR003675.5E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MATATTGQRT RKPLRISSPY AVAHHDHAST QVRSSRCRSL LLHPSVKFQA PSPTERVITS  60
MALQEHLDLI RAHLLEDHDV ATGATSSDAS ASPLTSPRGR RLQAPALSAP LPRRSATVMM  120
QQQWPAPLPQ VQRQERQCCC EEEDFRRYRG VRQRPWGKYT AEIRDPTRKG PRVWLGTYDT  180
AAEATRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-141471871454Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947122e-39FP094712.1 Phyllostachys edulis cDNA clone: bphyem113i06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464924.13e-37ethylene-responsive transcription factor ERF104
TrEMBLA0A1Z5S8A18e-36A0A1Z5S8A1_SORBI; Uncharacterized protein
TrEMBLA0A317YE758e-36A0A317YE75_MAIZE; Ethylene-responsive transcription factor 5
STRINGSb01g028930.11e-36(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61600.13e-18ethylene response factor 104